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Port details
rubygem-bioruby Integrated environment for Bioinformatics written in Ruby
1.4.3.0001 devel Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.4.3.0001Version of this port present on the latest quarterly branch.
Maintainer: ruby@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-06-22 12:46:08
Last Update: 2015-05-23 07:15:00
SVN Revision: 387110
Also Listed In: rubygems
License: not specified in port
WWW:
http://bioruby.org/
Description:
BioRuby project aims to implement integrated environment for Bioinformatics by using Ruby. WWW: http://bioruby.org/
Homepage    cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • rubygem-bioruby>0:devel/rubygem-bioruby
No installation instructions:
This port has been deleted.
PKGNAME: rubygem-bioruby
Flavors: there is no flavor information for this port.
distinfo:
There is no distinfo for this port.

No package information for this port in our database
Sometimes this happens. Not all ports have packages.
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gem20 : devel/ruby-gems
  2. ruby20 : lang/ruby20
Runtime dependencies:
  1. gem20 : devel/ruby-gems
  2. ruby20 : lang/ruby20
Patch dependencies:
  1. gem20 : devel/ruby-gems
  2. ruby20 : lang/ruby20
Extract dependencies:
  1. ruby20 : lang/ruby20
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
N/A
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (3 items)
Collapse this list.
  1. http://distcache.FreeBSD.org/ports-distfiles/rubygem/
  2. http://production.cf.rubygems.org/gems/
  3. http://production.s3.rubygems.org/gems/
Collapse this list.

Number of commits found: 15

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.4.3.0001
23 May 2015 07:15:00
Revision:387110Original commit files touched by this commit
sunpoet search for other commits by this committer
- Move devel/rubygem-bioruby to devel/rubygem-bio
- Add LICENSE
1.4.3.0001
19 Aug 2014 15:35:36
Revision:365393Original commit files touched by this commit
swills search for other commits by this committer
many ruby/rubygem ports: death of rubyforge.org

rubyforge.org shutdown on May 15, 2014. This commit accounts for that by doing
several things:

- Deprecate ruby that had only rubyforge.org as MASTER_SITES (and so are now
  only fetchable via our cache)
- Deprecate ports that depend on those
- Update the WWW pkg-descr line that points to rubyforge.org for rubygem ports
  (which are still fetchable from rubygems.org)

The next step will be to remove rubyforge.org from bsd.sites.mk, after these
deprecated ports are deleted.

Phabric:	D591
With hat:	ruby
Approved by:	portmgr (because of committing to unstaged graphics/mingplot port)
1.4.3.0001
30 Oct 2013 02:29:23
Revision:332034Original commit files touched by this commit
swills search for other commits by this committer
- Add stage support
1.4.3.0001
20 Sep 2013 17:17:45
Revision:327726Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
devel part 4)
1.4.3.0001
29 Jun 2013 22:10:31
Revision:322068Original commit files touched by this commit
swills search for other commits by this committer
- Update to 1.4.3.0001
1.4.3
27 Aug 2012 11:54:51
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 1.4.3
1.4.2
17 Oct 2011 08:25:45
Original commit files touched by this commit
clsung search for other commits by this committer
- Update to 1.4.2
1.4.1
23 Jun 2011 18:03:54
Original commit files touched by this commit
pgollucci search for other commits by this committer
- Removing remaining MD5 from rubygem- ports
1.4.1
29 Oct 2010 06:10:14
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 1.4.1
1.4.0
20 Oct 2010 01:35:47
Original commit files touched by this commit
pgollucci search for other commits by this committer
- Mass fixup of WWW: lines pkg-descr based on rubygems.org Homepage meta info

Prompted by:    distilator
With Hat:       ruby@
Sponsored by:   RideCharge Inc. / TaxiMagic
1.4.0
26 Aug 2010 23:52:26
Original commit files touched by this commit
pgollucci search for other commits by this committer
Move wen@FreeBSD.org -> ruby@FreeBSD.org for rubygem-*

Approved by:    wen
With Hat:       ruby
1.4.0
26 May 2010 19:51:35
Original commit files touched by this commit
pgollucci search for other commits by this committer
- Mass conversion of RF -> RG for MASTER_SITE for rubygem- ports
  [RG aka rubygems.org]

PR:             ports/147005
Submitted by:   pgollucci (myself)
Approved by:    portmgr (pav)
With Hat:       ruby@
1.4.0
01 Jan 2010 04:02:40
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 1.4.0
- Update my email address to FreeBSD
1.3.1
05 Sep 2009 00:54:20
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 1.3.1

Approved by:    maintainer implicit
1.3.0
22 Jun 2009 12:45:47
Original commit files touched by this commit
miwi search for other commits by this committer
BioRuby project aims to implement integrated environment for
Bioinformatics by using Ruby.

WWW:    http://bioruby.org/

PR:             ports/135856
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 15