FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

Port details
act A DNA sequence comparison viewer based on Artemis
2.0_1 biology Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: chuynh@biolateral.com.au search for ports maintained by this maintainer
Port Added: 16 Jan 2003 14:23:24
License: not specified in port
ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based on
Artemis. In common with Artemis, ACT is written in Java and runs on UNIX,
GNU/Linux, Macintosh and MS Windows systems. It can read complete EMBL
and GENBANK entries or sequence in FASTA or raw format. Extra sequence
features can be in EMBL, GENBANK or GFF format. ACT is distributed under the
same license as Artemis. 

The sequence comparison displayed by ACT is usually the result of a blastn or
tblastx search that has been processed by MSPcrunch. MSPcrunch must be run
with the -d flag for the output to be usable by ACT. 

WWW:  http://www.sanger.ac.uk/Software/ACT/manual
SVNWeb : Homepage : PortsMon

No installation instructions: this port has been deleted.

The package name of this deleted port was: act

PKGNAME: act

distinfo: There is no distinfo for this port.


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Runtime dependencies:
  1. java : java/jdk13
There are no ports dependent upon this port

Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. http://www.sanger.ac.uk/Software/ACT/v2/

Number of commits found: 6

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
12 Mar 2005 08:07:23
Original commit files touched by this commit  2.0_1
sem search for other commits by this committer
- biology/act is redundant after biology/artemis update

PR:             ports/76217
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:    maintainer timeout (2 monthes)
31 Mar 2004 03:12:58
Original commit files touched by this commit  2.0_1
trevor search for other commits by this committer
SIZEify (maintainer timeout)
04 Feb 2004 05:21:48
Original commit files touched by this commit  2.0_1
marcus search for other commits by this committer
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)
23 Jun 2003 13:37:39
Original commit files touched by this commit  2.0
daichi search for other commits by this committer
update ports/biology/act to latest release (v2)

PR:             49093
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>
21 Feb 2003 11:01:38
Original commit files touched by this commit  1.0
knu search for other commits by this committer
De-pkg-comment.
16 Jan 2003 14:22:59
Original commit files touched by this commit  1.0
edwin search for other commits by this committer
New Port: biology/act

PR:             ports/35753
Submitted by:   Camson Huynh <chuynh@biolateral.com.au>

Number of commits found: 6

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
eogAug 22
p5-PathTools*Aug 22
p5-XSLoader*Aug 22
perl5-devel*Aug 22
perl5-devel*Aug 22
perl5-devel*Aug 22
perl5.18*Aug 22
perl5.18*Aug 22
perl5.18*Aug 22
perl5.20*Aug 22
perl5.20*Aug 22
perl5.20*Aug 22
perl5.20*Aug 22
perl5.22*Aug 22
perl5.22*Aug 22

57 vulnerabilities affecting 92 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 26178
Broken 95
Deprecated 144
Ignore 365
Forbidden 0
Restricted 199
No CDROM 83
Vulnerable 65
Expired 16
Set to expire 130
Interactive 0
new 24 hours 14
new 48 hours14
new 7 days27
new fortnight48
new month125

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.