FreshPorts -- biology/ariadne

3086 FreshPorts -- biology/ariadne

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Port details

ariadne 1.3 biology =0

Programs to compare protein sequences and profiles

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org

Port Added: 22 Jun 2004 14:31:00
License: not specified in port

ARIADNE is a package of two programs, ariadne and prospero, that compare
protein sequences and profiles using the Smith-Waterman algorithm, and
assesses statistical significance using a new accurate formula,
described in Mott, 2000, "Accurate Formula for P-values of gapped local
sequence and profile alignments" J. Mol Biol. 300:649-659.

The sequence/profile comparison algorithms used in ARIADNE are standard,
and are probably not the fastest implementations available. The novel
part is the method for determining statistical significance, which will
give thresholds of significance that are accurate to within 5% 95% of
the time.

The package is written in ANSI C. You are free to incorporate the method
used for assessing statistical significance into third-party code,
provided you cite the above reference. The routines for assessing
significance are all in gaplib.c 

WWW: http://www.well.ox.ac.uk/ariadne/

SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.

Required To Build:

devel/gmake

There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/ariadne/ && make install clean
To add the package: pkg_add -r ariadne

Configuration Options

     No options to configure

Master Sites:

Number of commits found: 5

Commit History - (may be incomplete: see SVNWeb link above for full details)
Date	By	Description
01 Oct 2012 14:45:17 1.3	tabthorpe	- Reassign to the heap at maintainer's request
19 Mar 2011 12:38:54 1.3	miwi	- Get Rid MD5 support
03 May 2006 23:26:35 1.3	edwin	Remove USE_REINPLACE from all categories starting with B
22 Jan 2006 08:20:34 1.3	edwin	SHA256ify Approved by: krion@
22 Jun 2004 14:29:59 1.3	krion	Add ariadne 1.3, programs to compare protein sequences and profiles, using the Smith-Waterman algorithm. PR: ports/67811 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>

Number of commits found: 5

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