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Port details
ariadne 1.3 biology on this many watch lists=1 search for ports that depend on this port
Programs to compare protein sequences and profiles
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 22 Jun 2004 15:31:00


ARIADNE is a package of two programs, ariadne and prospero, that compare
protein sequences and profiles using the Smith-Waterman algorithm, and
assesses statistical significance using a new accurate formula,
described in Mott, 2000, "Accurate Formula for P-values of gapped local
sequence and profile alignments" J. Mol Biol. 300:649-659.

The sequence/profile comparison algorithms used in ARIADNE are standard,
and are probably not the fastest implementations available. The novel
part is the method for determining statistical significance, which will
give thresholds of significance that are accurate to within 5% 95% of
the time.

The package is written in ANSI C. You are free to incorporate the method
used for assessing statistical significance into third-party code,
provided you cite the above reference. The routines for assessing
significance are all in gaplib.c 

WWW: http://www.well.ox.ac.uk/ariadne/
CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon
Required To Build: devel/gmake

To install the port: cd /usr/ports/biology/ariadne/ && make install clean
To add the package: pkg_add -r ariadne


Configuration Options
     No options to configure

Master Sites:
http://www.well.ox.ac.uk/ariadne/
ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Number of commits found: 3

Commit History - (may be incomplete: see CVSWeb link above for full details)
DateByDescription
04 May 2006 00:26:35
Original commit files touched by this commit  1.3
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
22 Jan 2006 08:20:34
Original commit files touched by this commit  1.3
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
22 Jun 2004 15:29:59
Original commit files touched by this commit  1.3
krion search for other commits by this committer
Add ariadne 1.3, programs to compare protein sequences and
profiles, using the Smith-Waterman algorithm.

PR:             ports/67811
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>

Number of commits found: 3

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