artemis 9_1 biology =0

A DNA sequence viewer and annotation tool
Maintained by: fernan@iib.unsam.edu.ar
Port Added: 22 Dec 2001 11:39:40
Also Listed In: java

---

---

Artemis is a DNA sequence viewer and annotation tool that allows
visualisation of sequence features and the results of analyses within
the context of the sequence, and its six-frame translation.  Artemis is
written in Java, reads EMBL or GENBANK format sequences and feature
tables, and can work on sequences of any size.

ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based
on Artemis. It can open two or more sequences (and their
annotations/features) together with their comparisons (usually the
result of running blastn or tblastx searches).

WWW: http://www.sanger.ac.uk/Software/Artemis/manual
WWW: http://www.sanger.ac.uk/Software/ACT/manual

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

---

Required To Run: java/diablo-jdk15

---

To install the port: cd /usr/ports/biology/artemis/ && make install clean
To add the package: pkg_add -r artemis

---

Configuration Options

     No options to configure

---

Master Sites:

http://www.sanger.ac.uk/Software/Artemis/v9/

ftp://ftp.sanger.ac.uk/pub/pathogens/software/artemis/v9/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

• port moved here from biology/act on 2005-03-12
  REASON: act is redundant with new artemis
  

Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)

- Update to version 9
- Don't install CVS directories which are going to be removed
  in next release

PR:             ports/113831
Submitted by:   Thomas Abthorpe <thomas at goodking.ca>
Approved by:    maintainer timeout (20 days)

BROKEN: Unfetchable

- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

- Fix fetch problems

PR:             89971
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:    clement (mentor)

Update to version 7

PR:             86196
Submitted by:   Tony Maher <anthony.maher@uts.edu.au>
Approved by:    maintainer

- Add 'java' category
- Remove incorrect (and unneeded) JAVA_RUN statement

PR:             78761
Submitted by:   me

- Update to version 6
- Pass maintainership to submitter

PR:             ports/76219
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:    maintainer timeout (2 monthes)

SIZEify (maintainer timeout)

Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)

De-pkg-comment.

Initial import of artemis 4.0    

10 vulnerabilities affecting 29 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities