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Port details
artemis DNA sequence viewer and annotation tool
9_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 22 Dec 2001 11:39:40
Also Listed In: java
License: not specified in port
Artemis is a DNA sequence viewer and annotation tool that allows
visualisation of sequence features and the results of analyses within
the context of the sequence, and its six-frame translation.  Artemis is
written in Java, reads EMBL or GENBANK format sequences and feature
tables, and can work on sequences of any size.

ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based
on Artemis. It can open two or more sequences (and their
annotations/features) together with their comparisons (usually the
result of running blastn or tblastx searches).

WWW: http://www.sanger.ac.uk/Software/Artemis/manual
WWW: http://www.sanger.ac.uk/Software/ACT/manual
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Runtime dependencies:
  1. /usr/local/openjdk7/bin/java : java/openjdk7
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/artemis/ && make install clean
To add the package: pkg install biology/artemis


Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.sanger.ac.uk/pub/pathogens/software/artemis/v9/
  2. http://distcache.FreeBSD.org/ports-distfiles/
  3. http://www.sanger.ac.uk/Software/Artemis/v9/

Number of commits found: 19

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
20 Oct 2014 07:10:48
Original commit files touched by this commit  9_1
Revision:371237
bapt search for other commits by this committer
Cleanup plist
20 Jan 2014 23:06:48
Original commit files touched by this commit  9_1
Revision:340486
bapt search for other commits by this committer
Support stage
20 Sep 2013 15:55:44
Original commit files touched by this commit  9_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
10 Dec 2012 11:25:28
Original commit files touched by this commit  9_1
Revision:308600
bapt search for other commits by this committer
Decommissioning java 1.5 (EOLed since October 2009):
suppress any reference to USE_JAVA=	1.5+ (part1)
01 Oct 2012 14:45:17
Original commit files touched by this commit  9_1
Revision:305130
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
21 Jul 2011 05:03:02
Original commit files touched by this commit  9_1
linimon search for other commits by this committer
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
remove support for them from bsd.java.mk.  As Jikes is not available in Java 1.5
or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports
which used it (only occurences were USE_JIKES=no).  Support for the Blackdown VM
is also removed, as it is not available in Java 1.5 and higher.

Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect
old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5.
While here, replace static values of JAVA_VERSION in files/*.in by
%%JAVA_VERSION%% .

PR:             ports/158969
Submitted by:   rene
Tested on:      pointyhat-west -exp
19 Mar 2011 12:38:54
Original commit files touched by this commit  9_1
miwi search for other commits by this committer
- Get Rid MD5 support
06 Jun 2008 13:08:29
Original commit files touched by this commit  9_1
edwin search for other commits by this committer
Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)
08 Jul 2007 11:47:58
Original commit files touched by this commit  9
rafan search for other commits by this committer
- Update to version 9
- Don't install CVS directories which are going to be removed
  in next release

PR:             ports/113831
Submitted by:   Thomas Abthorpe <thomas at goodking.ca>
Approved by:    maintainer timeout (20 days)
26 May 2007 21:03:05
Original commit files touched by this commit  7_2
kris search for other commits by this committer
BROKEN: Unfetchable
19 May 2007 20:32:57
Original commit files touched by this commit  7_2
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
05 Dec 2005 16:57:26
Original commit files touched by this commit  7_1
tdb search for other commits by this committer
- Fix fetch problems

PR:             89971
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:    clement (mentor)
20 Sep 2005 14:59:28
Original commit files touched by this commit  7
hq search for other commits by this committer
Update to version 7

PR:             86196
Submitted by:   Tony Maher <anthony.maher@uts.edu.au>
Approved by:    maintainer
20 Mar 2005 14:43:55
Original commit files touched by this commit  6
hq search for other commits by this committer
- Add 'java' category
- Remove incorrect (and unneeded) JAVA_RUN statement

PR:             78761
Submitted by:   me
12 Mar 2005 08:01:19
Original commit files touched by this commit  6
sem search for other commits by this committer
- Update to version 6
- Pass maintainership to submitter

PR:             ports/76219
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:    maintainer timeout (2 monthes)
31 Mar 2004 03:12:58
Original commit files touched by this commit  4.0_1
trevor search for other commits by this committer
SIZEify (maintainer timeout)
04 Feb 2004 05:21:48
Original commit files touched by this commit  4.0_1
marcus search for other commits by this committer
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)
21 Feb 2003 11:01:38
Original commit files touched by this commit  4.0
knu search for other commits by this committer
De-pkg-comment.
22 Dec 2001 14:39:40
files touched by this commit
kevlo search for other commits by this committer
Initial import of artemis 4.0    

Number of commits found: 19

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