avida 2.10.0 biology =0

Avida is an auto-adaptive genetic system designed for ALife research
Maintained by: cs@FreeBSD.org
Port Added: 20 Apr 2002 15:17:56
License: GPLv2

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The computer program avida is an auto-adaptive genetic system designed
primarily for use as a platform in Digital or Artificial Life research. The
avida system is based on concepts similar to those employed by the tierra
program developed by Tom Ray. It is a population of self-reproducing strings
with a Turing-complete genetic basis subjected to Poisson-random mutations.
The population adapts to the combination of an intrinsic fitness landscape
(self-reproduction) and an externally imposed (extrinsic) fitness function
provided by the researcher. By studying this system, one can examine
evolutionary adaptation, general traits of living systems (such as
self-organization), and other issues pertaining to theoretical or
evolutionary biology and dynamic systems.

WWW: http://avida.devosoft.org/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: devel/cmake
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/avida/ && make install clean
To add the package: pkg_add -r avida

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Configuration Options

     No options to configure

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Master Sites:

http://heanet.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://sunet.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://iweb.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://switch.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://surfnet.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://kent.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://freefr.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://voxel.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://jaist.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://osdn.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://nchc.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://ncu.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://transact.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://softlayer.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://internode.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://ufpr.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

http://waix.dl.sourceforge.net/project/avida/avida-stable/2.10.0/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Change maintainer address to my FreeBSD address

Approved by:    wen@ (mentor)

- Get Rid MD5 support

Also broken on sparc64 (and, by implication, ia64).

Hat:            portmgr

- Update to 2.10.0
- Add LICENSE
- Mark MAKE_JOBS_SAFE
- Eliminate unnecessary patch
- Note new homepage in pkg-descr
- Pass maintainership to submitter

PR:             ports/149827
Submitted by:   C-S <c-s@c-s.li>

Mark various ports as broken or ignore on powerpc.

While here, remove remnants of alpha.

For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.

- Switch SourceForge ports to the new File Release System: categories starting
with B,C

bump PORTREVISION after cmake update

- Update to 2.8.1

PR:             128057
Submitted by:   Christian Sturm <athaba at inode dot at>

Reset sf@slappy.org due to maintainer-timeouts and no response to email.

Hat:    portmgr

[patch] cleanup non-supported FreeBSD versions

PR:             ports/111724
Submitted by:   Edwin Groothuis <edwin@mavetju.org>
Approved by:    maintainer timeout

Mark as broken for i386 4.x

PR:             ports/101789
Submitted by:   Scott Flatman <sf@slappy.org>

- Update to 2.4.3
- Pass maintainersip to submitter

PR:             99901
Submitted by:   Scott Flatman <sf slappy.org>
Approved by:    delphij (mentor, implicit)

Remove USE_REINPLACE from all categories starting with B

- Add SHA256

At Kris's request, back out the MACHINE_ARCH spelling correction until
after 5.4-RELEASE.

Assist getting more ports working on AMD64 by obeying the
Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.

The build should be fixed now, so remove BROKEN mark.

Approved by:    portmgr (marcus), fjoe (mentor, implicit)

Unbreak the build on 5.X and -CURRENT.

Reported by:    pointyhat.freebsd.org
Approved by:    portmgr (marcus), fjoe (mentor, implicit)

BROKEN on 5.x: Does not compile

Approved by:    portmgr (self)

Add forgotten patches...

BROKEN: Broken pkg-plist

Add a missing BUILD_DEPENDS.

Reported by:    Kris.

Upgrade to 2.0b7 and unbreak.

Fix MASTER_SITES

Tidy up whitespace.

SIZEify.

Maintainer reports being unable to look after this port any longer.
Thanks for your efforts in the past.

Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)

Move inclusion of bsd.port.pre.mk later in the file for conditional BROKEN
tag.  Early inclusion caused problems for some ports, so to be safe I'm
updating all of them.

Pointy hat to:  kris

BROKEN on 5.1: bad C++

De-pkg-comment.

Add some missing files

Make biology/avida building on -current again

PR:             ports/44819
Submitted by:   Oliver Lehmann <lehmann@ans-netz.de>
Approved by:    Jeremy Karlson <karlj000@unbc.ca>

BROKEN: Does not build

add avida 1.6.0
Avida is an auto-adaptive genetic system designed for ALife research

PR:             37268
Submitted by:   Jeremy Karlson <karlj000@unbc.ca>

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities