FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

I am looking for an LTO tape library. Do you have one to spare?
Port details
biococoa Bioinformatics framework
2.2.2_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: theraven@FreeBSD.org search for ports maintained by this maintainer
Port Added: 30 Dec 2006 09:21:22
Also Listed In: gnustep
License: LGPL21
The BioCocoa framework provides developers with the opportunity to add
support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
TNT files by writing only three lines of code.
The framework is written in Cocoa (Objective-C).

LICENSE: LGPL2 or later

WWW: http://bioinformatics.org/biococoa/
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. /usr/local/GNUstep/System/Library/Makefiles/GNUstep.sh : devel/gnustep-make
  2. /usr/local/GNUstep/System/Library/Bundles/libgnustep-back-024.bundle/libgnustep-back-024 : x11-toolkits/gnustep-back
  3. gmake : devel/gmake
Runtime dependencies:
  1. /usr/local/GNUstep/System/Library/Makefiles/GNUstep.sh : devel/gnustep-make
  2. /usr/local/GNUstep/System/Library/Bundles/libgnustep-back-024.bundle/libgnustep-back-024 : x11-toolkits/gnustep-back

This port is required by:

for Build for Run * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

To install the port: cd /usr/ports/biology/biococoa/ && make install clean
To add the package: pkg install biology/biococoa


Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.acc.umu.se/debian/pool/main/b/biococoa.app/
  2. ftp://ftp.au.debian.org/debian/pool/main/b/biococoa.app/
  3. ftp://ftp.bg.debian.org/debian/pool/main/b/biococoa.app/
  4. ftp://ftp.br.debian.org/debian/pool/main/b/biococoa.app/
  5. ftp://ftp.cl.debian.org/debian/pool/main/b/biococoa.app/
  6. ftp://ftp.cz.debian.org/debian/pool/main/b/biococoa.app/
  7. ftp://ftp.de.debian.org/debian/pool/main/b/biococoa.app/
  8. ftp://ftp.df.lth.se/pub/debian/pool/main/b/biococoa.app/
  9. ftp://ftp.ee.debian.org/debian/pool/main/b/biococoa.app/
  10. ftp://ftp.es.debian.org/debian/pool/main/b/biococoa.app/
  11. ftp://ftp.fi.debian.org/debian/pool/main/b/biococoa.app/
  12. ftp://ftp.fr.debian.org/debian/pool/main/b/biococoa.app/
  13. ftp://ftp.hk.debian.org/debian/pool/main/b/biococoa.app/
  14. ftp://ftp.hr.debian.org/debian/pool/main/b/biococoa.app/
  15. ftp://ftp.hu.debian.org/debian/pool/main/b/biococoa.app/
  16. ftp://ftp.ie.debian.org/debian/pool/main/b/biococoa.app/
  17. ftp://ftp.is.debian.org/debian/pool/main/b/biococoa.app/
  18. ftp://ftp.it.debian.org/debian/pool/main/b/biococoa.app/
  19. ftp://ftp.jp.debian.org/debian/pool/main/b/biococoa.app/
  20. ftp://ftp.nl.debian.org/debian/pool/main/b/biococoa.app/
  21. ftp://ftp.no.debian.org/debian/pool/main/b/biococoa.app/
  22. ftp://ftp.pl.debian.org/debian/pool/main/b/biococoa.app/
  23. ftp://ftp.ru.debian.org/debian/pool/main/b/biococoa.app/
  24. ftp://ftp.se.debian.org/debian/pool/main/b/biococoa.app/
  25. ftp://ftp.si.debian.org/debian/pool/main/b/biococoa.app/
  26. ftp://ftp.sk.debian.org/debian/pool/main/b/biococoa.app/
  27. ftp://ftp.snt.utwente.nl/pub/linux/debian/pool/main/b/biococoa.app/
  28. ftp://ftp.uk.debian.org/debian/pool/main/b/biococoa.app/
  29. ftp://ftp.us.debian.org/debian/pool/main/b/biococoa.app/
  30. ftp://ftp.wa.au.debian.org/debian/pool/main/b/biococoa.app/
  31. ftp://ftp2.de.debian.org/debian/pool/main/b/biococoa.app/
  32. ftp://mirror.symnds.com/debian/pool/main/b/biococoa.app/
  33. http://bioinformatics.org/biococoa/downloads/
  34. http://cdn.debian.net/debian/pool/main/b/biococoa.app/
  35. http://distcache.FreeBSD.org/ports-distfiles/
  36. http://ring.nict.go.jp/archives/linux/debian/debian/pool/main/b/biococoa.app/
  37. http://www.gtlib.gatech.edu/pub/debian/pool/main/b/biococoa.app/

Number of commits found: 16

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
20 Oct 2014 07:10:48
Original commit files touched by this commit  2.2.2_1
Revision:371237
bapt search for other commits by this committer
Cleanup plist
10 Sep 2014 20:50:37
Original commit files touched by this commit  2.2.2_1
Revision:367888
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
08 Oct 2013 18:34:45
Original commit files touched by this commit  2.2.2
Revision:329819
theraven search for other commits by this committer
Update BioCocoa to the latest release.

Approved by:	bapt (mentor)
20 Sep 2013 15:55:44
Original commit files touched by this commit  2.2.1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
28 Aug 2013 18:26:01
Original commit files touched by this commit  2.2.1
Revision:325546
theraven (src committer) search for other commits by this committer
Update to latest GNUstep core libraries.
Update dependent packages with more recent releases.
Remove old and bit-rotted ones.
Switch to using clang 3.3 and libobjc2 1.7 by default, so modern Objective-C
features work out of the box and remove a lot of configurable options for
sub-optimal (and, often, unsupported / deprecated upstream) configurations.
Take maintainership of GNUstep-related ports.

Several of the ports left in have scary warnings which mean that they are likely
broken in lots of cases.  Future commits will fix them.

Approved by:	bapt
13 Oct 2012 13:39:59
Original commit files touched by this commit  1.6.0_2
Revision:305832
dinoex search for other commits by this committer
- cleanup comments
Feature safe: yes
26 Jun 2012 05:43:33
Original commit files touched by this commit  1.6.0_2
dinoex search for other commits by this committer
- reset MAINTAINER
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.6.0_2
miwi search for other commits by this committer
- Get Rid MD5 support
05 Jun 2010 06:14:28
Original commit files touched by this commit  1.6.0_2
dinoex search for other commits by this committer
LICENSE LGPL21
30 May 2010 12:28:39
Original commit files touched by this commit  1.6.0_2
dinoex search for other commits by this committer
- drop USE_GNUSTEP_PREFIX
16 Jan 2009 16:01:05
Original commit files touched by this commit  1.6.0_2
dinoex search for other commits by this committer
- add LICENSE:
06 Jun 2008 13:08:29
Original commit files touched by this commit  1.6.0_2
edwin search for other commits by this committer
Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)
25 May 2007 05:55:36
Original commit files touched by this commit  1.6.0_1
dinoex search for other commits by this committer
- update for gnustep-make-2.0.0
19 May 2007 20:32:57
Original commit files touched by this commit  1.6.0_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
31 Jan 2007 18:18:14
Original commit files touched by this commit  1.6.0
dinoex search for other commits by this committer
- add category gnustep
PR:             103931
Approved by:    pav
30 Dec 2006 09:20:54
Original commit files touched by this commit  1.6.0
dinoex search for other commits by this committer
The BioCocoa framework provides developers with the opportunity to add
support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
TNT files by writing only three lines of code.
The framework is written in Cocoa (Objective-C).

WWW: http://bioinformatics.org/biococoa/

Number of commits found: 16

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
muttDec 23
muttDec 23
ntpDec 20
ntp-develDec 20
gitDec 19
otrsDec 16
mod_dav_svnDec 15
subversionDec 15
subversion16Dec 15
subversion17Dec 15
nvidia-driverDec 14
nvidia-driver-173Dec 14
nvidia-driver-304Dec 14
asterisk11Dec 11
bind99Dec 11

10 vulnerabilities affecting 28 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24439
Broken 148
Deprecated 75
Ignore 399
Forbidden 2
Restricted 207
No CDROM 93
Vulnerable 20
Expired 0
Set to expire 70
Interactive 0
new 24 hours 6
new 48 hours7
new 7 days22
new fortnight45
new month100

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.