biococoa 1.6.0_2 biology =0

Bioinformatics framework
Maintained by: dinoex@FreeBSD.org
Port Added: 30 Dec 2006 09:21:22
Also Listed In: gnustep
License: LGPL21

The BioCocoa framework provides developers with the opportunity to add
support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
TNT files by writing only three lines of code.
The framework is written in Cocoa (Objective-C).

LICENSE: LGPL2 or later

WWW: http://bioinformatics.org/biococoa/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: lang/gcc42, devel/gnustep-make, x11-toolkits/gnustep-back, devel/gmake
Required To Run: lang/gcc42, devel/gnustep-make, x11-toolkits/gnustep-back
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/biococoa/ && make install clean
To add the package: pkg_add -r biococoa

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Configuration Options

     No options to configure

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Master Sites:

http://www.gtlib.cc.gatech.edu/pub/debian/pool/main/b/biococoa.app/

ftp://ftp.us.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.au.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.bg.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.cl.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.cz.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.de.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.ee.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.es.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.fi.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.fr.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.hk.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.hr.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.hu.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.ie.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.is.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.it.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.jp.debian.org/debian/pool/main/b/biococoa.app/

http://ring.nict.go.jp/archives/linux/debian/debian/pool/main/b/biococoa.app/

http://ring.riken.jp/archives/linux/debian/debian/pool/main/b/biococoa.app/

ftp://ftp.nl.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.no.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.pl.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.ru.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.se.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.si.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.sk.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.uk.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.wa.au.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp2.de.debian.org/debian/pool/main/b/biococoa.app/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Get Rid MD5 support

LICENSE LGPL21

- drop USE_GNUSTEP_PREFIX

- add LICENSE:

Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)

- update for gnustep-make-2.0.0

- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

- add category gnustep
PR:             103931
Approved by:    pav

The BioCocoa framework provides developers with the opportunity to add
support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
TNT files by writing only three lines of code.
The framework is written in Cocoa (Objective-C).

WWW: http://bioinformatics.org/biococoa/

14 vulnerabilities affecting 32 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities