4326 FreshPorts -- biology/blat
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blat 34 biology on this many watch lists=0 search for ports that depend on this port
A fast tool for local sequence similarity searches

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 15 Mar 2006 10:29:12
License: not specified in port


BLAT is a bioinformatics software tool which performs rapid mRNA/DNA
and cross-species protein alignments. BLAT is more accurate and 500
times faster than popular existing tools for mRNA/DNA alignments and 50
times faster for protein alignments at sensitivity settings typically
used when comparing vertebrate sequences. (Source: Kent, W.J. 2002. BLAT
-- The BLAST-Like Alignment Tool. Genome Research 4: 656-664.
http://dx.doi.org/10.1101/gr.229202)

BLAT is not BLAST. DNA BLAT works by keeping an index of the entire
genome (but not the genome itself) in memory. Since the index takes up a
bit less than a gigabyte of RAM, BLAT can deliver high performance on a
reasonably priced Linux box.

WWW: http://www.genomeblat.com
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.

Required To Build:
  1. devel/gmake
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/blat/ && make install clean
To add the package: pkg_add -r blat


Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. http://www.soe.ucsc.edu/~kent/src/

Number of commits found: 9

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
01 Oct 2012 14:45:17
Original commit files touched by this commit  34
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
19 Mar 2011 12:38:54
Original commit files touched by this commit  34
miwi search for other commits by this committer
- Get Rid MD5 support
25 Jul 2008 14:34:52
Original commit files touched by this commit  34
pav search for other commits by this committer
- Remove USE_GCC where it can be satisfied with base compiler on following
  FreeBSD versions: 5.3 and up, 6.x, 7.x, 8-CURRENT
30 Apr 2008 23:19:29
Original commit files touched by this commit  34
okazaki search for other commits by this committer
Update to version 34.
Remove BROKEN.

PR:             123218
Submitted by:   maintainer
04 Jan 2008 15:14:52
Original commit files touched by this commit  33
arved search for other commits by this committer
Fix build on !i386

PR:             118922
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
Approved by:    Fernan Aguero <fernan@iib.unsam.edu.ar>
04 Dec 2007 23:08:55
Original commit files touched by this commit  33
pav search for other commits by this committer
- Mark BROKEN outside i386: does not compile

Reported by:    pointyhat
Approved by:    portmgr (hat)
02 Oct 2007 09:10:48
Original commit files touched by this commit  33
linimon search for other commits by this committer
Mark as broken on gcc4.2.
02 May 2007 07:15:18
Original commit files touched by this commit  33
edwin search for other commits by this committer
[patch] cleanup non-supported FreeBSD versions

PR:             ports/111726
Submitted by:   Edwin Groothuis <edwin@mavetju.org>
Approved by:    maintainer timeout
15 Mar 2006 10:26:12
Original commit files touched by this commit  33
garga search for other commits by this committer
Add blat 33, a fast tool for local sequence similarity searches.

PR:             ports/93060
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>

Number of commits found: 9

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