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Port details
blat 35 biology on this many watch lists=0 search for ports that depend on this port
Fast tool for local sequence similarity searches

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 15 Mar 2006 10:29:12
License: not specified in port


BLAT is a bioinformatics software tool which performs rapid mRNA/DNA and
cross-species protein alignments. BLAT is more accurate and 500 times
faster than popular existing tools for mRNA/DNA alignments and 50 times
faster for protein alignments at sensitivity settings typically used
when comparing vertebrate sequences. (Source: Kent, W.J. 2002. BLAT --
The BLAST-Like Alignment Tool. Genome Research 4: 656-664.
http://dx.doi.org/10.1101/gr.229202)

BLAT is not BLAST. DNA BLAT works by keeping an index of the entire
genome (but not the genome itself) in memory. Since the index takes up a
bit less than a gigabyte of RAM, BLAT can deliver high performance on a
reasonably priced Linux box.

WWW: http://users.soe.ucsc.edu/~kent/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Required To Build:
  1. security/openssl
  2. devel/gmake
Required To Run:
  1. security/openssl
Required Libraries:
  1. graphics/png
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/blat/ && make install clean
To add the package: pkg install biology/blat


Configuration Options
===> The following configuration options are available for blat-35:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings

Master Sites:
  1. http://distcache.FreeBSD.org/ports-distfiles/
  2. http://hgwdev.cse.ucsc.edu/~kent/src/
  3. http://users.soe.ucsc.edu/~kent/src/

Number of commits found: 16

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
25 Jun 2014 08:55:56
Original commit files touched by this commit  35
Revision:359207
antoine search for other commits by this committer
Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk
07 Mar 2014 15:52:40
Original commit files touched by this commit  35
Revision:347402
bapt search for other commits by this committer
Convert b* to USES=zip
27 Feb 2014 11:46:11
Original commit files touched by this commit  35
Revision:346318
miwi search for other commits by this committer
- Update to 35

PR:		184245
12 Nov 2013 22:02:02
Original commit files touched by this commit  34
Revision:333628
bapt search for other commits by this committer
Add stage support
Use bsdtar to extract the distfile
Rip out USE_GMAKE
20 Sep 2013 15:55:44
Original commit files touched by this commit  34
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
19 Jun 2013 18:44:33
Original commit files touched by this commit  34
Revision:321305
bsam search for other commits by this committer
. remove pkg-plist (along with the previous commit).
19 Jun 2013 18:43:13
Original commit files touched by this commit  34
Revision:321304
bsam search for other commits by this committer
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use PORTDOCS and PORTDATA at makefile;
. mute mkdirs;
. add padding to PKGMESSAGE;
. remove article from COMMENT.
01 Oct 2012 14:45:17
Original commit files touched by this commit  34
Revision:305130
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
19 Mar 2011 12:38:54
Original commit files touched by this commit  34
miwi search for other commits by this committer
- Get Rid MD5 support
25 Jul 2008 14:34:52
Original commit files touched by this commit  34
pav search for other commits by this committer
- Remove USE_GCC where it can be satisfied with base compiler on following
  FreeBSD versions: 5.3 and up, 6.x, 7.x, 8-CURRENT
30 Apr 2008 23:19:29
Original commit files touched by this commit  34
okazaki search for other commits by this committer
Update to version 34.
Remove BROKEN.

PR:             123218
Submitted by:   maintainer
04 Jan 2008 15:14:52
Original commit files touched by this commit  33
arved search for other commits by this committer
Fix build on !i386

PR:             118922
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
Approved by:    Fernan Aguero <fernan@iib.unsam.edu.ar>
04 Dec 2007 23:08:55
Original commit files touched by this commit  33
pav search for other commits by this committer
- Mark BROKEN outside i386: does not compile

Reported by:    pointyhat
Approved by:    portmgr (hat)
02 Oct 2007 09:10:48
Original commit files touched by this commit  33
linimon search for other commits by this committer
Mark as broken on gcc4.2.
02 May 2007 07:15:18
Original commit files touched by this commit  33
edwin search for other commits by this committer
[patch] cleanup non-supported FreeBSD versions

PR:             ports/111726
Submitted by:   Edwin Groothuis <edwin@mavetju.org>
Approved by:    maintainer timeout
15 Mar 2006 10:26:12
Original commit files touched by this commit  33
garga search for other commits by this committer
Add blat 33, a fast tool for local sequence similarity searches.

PR:             ports/93060
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>

Number of commits found: 16

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