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Port details
clustalw 2.1_1 biology on this many watch lists=0 search for ports that depend on this port
Restricted RESTRICTED: No commercial use.
Multiple alignment program for DNA or proteins
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 10 Jul 2000 00:17:41
License: not specified in port


ClustalW2 is a general purpose multiple sequence alignment program for
DNA or proteins. It produces biologically meaningful multiple sequence
alignments of divergent sequences. It calculates the best match for the
selected sequences, and lines them up so that the identities,
similarities and differences can be seen. Evolutionary relationships
can be seen via viewing Cladograms or Phylograms. 

WWW: http://www.clustal.org/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

This port is required by:

for Build for Run * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

To install the port: cd /usr/ports/biology/clustalw/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted


Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. ftp://ftp.ebi.ac.uk/pub/software/clustalw2/2.1/
  3. http://www.clustal.org/download/2.1/

Number of commits found: 24

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
20 Dec 2013 15:29:07
Original commit files touched by this commit  2.1_1
Revision:337026
wen search for other commits by this committer
- Fix build with clang/libc++.
- Support staging.

PR:		184974
Submitted by:	tijl@
20 Sep 2013 15:55:44
Original commit files touched by this commit  2.1_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
11 Aug 2011 19:20:17
Original commit files touched by this commit  2.1_1
  Sanity Test Failure
kwm search for other commits by this committer
Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
mid 2008.

PR:             ports/159624
Submitted by:   Ruslan Mahmatkhanov <cvs-src@yandex.ru>
21 Dec 2010 00:12:22
Original commit files touched by this commit  2.1_1
wen search for other commits by this committer
- Fix fetch

Reported by:    QAT@
22 Nov 2010 00:15:25
Original commit files touched by this commit  2.1
wen search for other commits by this committer
- Update to 2.1
27 Dec 2009 03:05:04
Original commit files touched by this commit  2.0.12
wen search for other commits by this committer
- Fix fetch error
29 Nov 2009 01:16:36
Original commit files touched by this commit  2.0.12
wen search for other commits by this committer
- Update to 2.0.12
- Update my mail address to FreeBSD
29 Apr 2008 12:58:52
Original commit files touched by this commit  2.0.6
miwi search for other commits by this committer
- Update to 2.0.6
- Pass maintainership to submitter

PR:             123193
Submitted by:   Wen heping <wenheping@gmail.com>
19 Mar 2008 14:01:13
Original commit files touched by this commit  2.0.5
jadawin search for other commits by this committer
- Update to 2.0.5
- Add RESTRICTED due to non-commercial use licence.

PR:             ports/121794
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Approved by:    thierry and tabthorpe (mentors)
19 Mar 2008 13:31:52
Original commit files touched by this commit  2.0.3_1
jadawin search for other commits by this committer
- Update to version 2.0.5
- Add RESTRICTED due to a non-commercial use licence.

PR:             ports/121794
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Approved by:    thierry and tabthorpe (mentors)
26 Feb 2008 19:53:40
Original commit files touched by this commit  2.0.3_1
pav search for other commits by this committer
- Restore clustalw symlink, other ports rely on it

Reported by:    pointyhat
Pointy hat to:  pav
25 Feb 2008 22:05:06
Original commit files touched by this commit  2.0.3
pav search for other commits by this committer
- Update to 2.0.3
15 Dec 2007 18:47:00
Original commit files touched by this commit  2.0
pav search for other commits by this committer
- Update to 2.0

PR:             ports/117713
Submitted by:   Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
11 Mar 2007 03:20:27
Original commit files touched by this commit  1.83
linimon search for other commits by this committer
Reset dbader@eece.unm.edu due to maintainer-timeout.  While here, fix fetch.
22 Jan 2006 08:20:34
Original commit files touched by this commit  1.83
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
28 Aug 2003 04:51:02
Original commit files touched by this commit  1.83
krion search for other commits by this committer
- Add an end-of-string to each line of the input
  when parsing the input files

PR:             56043
Submitted by:   maintainer
15 Feb 2003 18:43:14
Original commit files touched by this commit  1.83
naddy search for other commits by this committer
Update to 1.83.

PR:             48264
Submitted by:   David A. Bader <dbader@eece.unm.edu>
27 Mar 2002 14:01:57
Original commit files touched by this commit  1.82_2
wjv search for other commits by this committer
- Add a new patch
- Bump $PORTREVISION

PR:             36206
Submitted by:   David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
22 Mar 2002 08:23:23
Original commit files touched by this commit  1.82_1
wjv search for other commits by this committer
- Fix certain mistakes in FreeBSD patches
- Bump PORTREVISION
- Poroblem originally reported by Fernan Aguero <fernan@iib.unsam.edu.ar> on
  FreeBSD-bio list

PR:             36169
Submitted by:   David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
10 Jul 2001 14:54:22
files touched by this commit
sobomax search for other commits by this committer
${PREFIX}/share/${PORTNAME} --> ${DATADIR}    
03 Jul 2001 09:10:29
files touched by this commit
wjv search for other commits by this committer
Update to version 1.82    
08 Oct 2000 00:23:30
files touched by this commit
asami search for other commits by this committer
Convert category biology to new layout.  
03 Oct 2000 02:10:19
files touched by this commit
jeh search for other commits by this committer
- Support CC/CFLAGS/PREFIX properly   - gets() -> fgets()   - Add WWW: line into
pkg/DESCR    
10 Jul 2000 04:17:41
files touched by this commit
steve search for other commits by this committer
Adding clustalw version 1.81.   A CLUSTAL W Multiple Sequence Alignment Program.
   

Number of commits found: 24

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