clustalw 2.1_1 biology =1

RESTRICTED: No commercial use.
A multiple alignment program for DNA or proteins
Maintained by: wen@FreeBSD.org
Port Added: 10 Jul 2000 00:17:41
License: not specified in port

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ClustalW2 is a general purpose multiple sequence alignment program for
DNA or proteins. It produces biologically meaningful multiple sequence
alignments of divergent sequences. It calculates the best match for the
selected sequences, and lines them up so that the identities,
similarities and differences can be seen. Evolutionary relationships
can be seen via viewing Cladograms or Phylograms. 

WWW: http://www.clustal.org/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMonThere are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/clustalw/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

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Configuration Options

     No options to configure

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Master Sites:

ftp://ftp.ebi.ac.uk/pub/software/clustalw2/2.1/

http://www.clustal.org/download/2.1/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
mid 2008.

PR:             ports/159624
Submitted by:   Ruslan Mahmatkhanov <cvs-src@yandex.ru>

- Fix fetch

Reported by:    QAT@

- Update to 2.1

- Fix fetch error

- Update to 2.0.12
- Update my mail address to FreeBSD

- Update to 2.0.6
- Pass maintainership to submitter

PR:             123193
Submitted by:   Wen heping <wenheping@gmail.com>

- Update to 2.0.5
- Add RESTRICTED due to non-commercial use licence.

PR:             ports/121794
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Approved by:    thierry and tabthorpe (mentors)

- Update to version 2.0.5
- Add RESTRICTED due to a non-commercial use licence.

PR:             ports/121794
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Approved by:    thierry and tabthorpe (mentors)

- Restore clustalw symlink, other ports rely on it

Reported by:    pointyhat
Pointy hat to:  pav

- Update to 2.0.3

- Update to 2.0

PR:             ports/117713
Submitted by:   Motomichi Matsuzaki <mzaki@e-mail.ne.jp>

Reset dbader@eece.unm.edu due to maintainer-timeout.  While here, fix fetch.

SHA256ify

Approved by:    krion@

- Add an end-of-string to each line of the input
  when parsing the input files

PR:             56043
Submitted by:   maintainer

Update to 1.83.

PR:             48264
Submitted by:   David A. Bader <dbader@eece.unm.edu>

- Add a new patch
- Bump $PORTREVISION

PR:             36206
Submitted by:   David A. Bader <dbader@eece.unm.edu> (MAINTAINER)

- Fix certain mistakes in FreeBSD patches
- Bump PORTREVISION
- Poroblem originally reported by Fernan Aguero <fernan@iib.unsam.edu.ar> on
  FreeBSD-bio list

PR:             36169
Submitted by:   David A. Bader <dbader@eece.unm.edu> (MAINTAINER)

${PREFIX}/share/${PORTNAME} --> ${DATADIR}    

Update to version 1.82    

Convert category biology to new layout.  

- Support CC/CFLAGS/PREFIX properly   - gets() -> fgets()   - Add WWW: line into
pkg/DESCR    

Adding clustalw version 1.81.   A CLUSTAL W Multiple Sequence Alignment Program.
   

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

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