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Port details
coalesce A program to fit population models
1.50 biology Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.50Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: distfile disappeared from homepage
Expired This port expired on: 2007-01-07
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2001-08-06 11:41:58
Last Update: 2007-01-25 11:25:40
SVN Revision: UNKNOWN
License: not specified in port
WWW:
http://evolution.genetics.washington.edu/lamarc/recombine.html
Description:
Coalesce fits the model which has a single population of constant size, and estimates 4Nu, where N is the effective population size and u is the neutral mutation rate per site Coalesce forms part of the Lamarc (Likelihood Analysis with Metropolis Algorithm using Random Coalescence) suite. See: http://evolution.genetics.washington.edu/lamarc.html WWW: http://evolution.genetics.washington.edu/lamarc/recombine.html -- Johann Visagie <wjv@FreeBSD.org>
Homepage    cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • coalesce>0:biology/coalesce
No installation instructions:
This port has been deleted.
PKGNAME: coalesce
Flavors: there is no flavor information for this port.
distinfo:
There is no distinfo for this port.

No package information for this port in our database
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This port has no dependencies.
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
N/A
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. ftp://evolution.genetics.washington.edu/pub/lamarc/coalesce/
  2. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
Collapse this list.

Number of commits found: 9

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.50
25 Jan 2007 11:25:40
Original commit files touched by this commit
vd search for other commits by this committer
Remove expired leaf port:
2007-01-07 biology/coalesce: distfile disappeared from homepage

Actually the software is still available at:
http://evolution.gs.washington.edu/lamarc/coalesce.html, but it is
not supported by the authors. Last version is from 1995 and
biology/fluctuate can be used instead.
1.50
10 Dec 2006 12:36:54
Original commit files touched by this commit
gabor search for other commits by this committer
- Deprecate
- Set EXPIRATION_DATE

Approved by:    erwin (mentor)
1.50
24 Nov 2005 00:04:00
Original commit files touched by this commit
pav search for other commits by this committer
- Add SHA256
1.50
18 Feb 2005 12:58:07
Original commit files touched by this commit
krion search for other commits by this committer
Fix unfetchable tarball, it was renamed and relocated on original
server.

PR:             ports/77674
Submitted by:   Sam Lawrance <boris at brooknet.com.au>
1.50
20 Nov 2004 08:09:49
Original commit files touched by this commit
linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
1.50
31 Mar 2004 03:12:58
Original commit files touched by this commit
trevor search for other commits by this committer
SIZEify (maintainer timeout)
1.50
22 Oct 2003 09:29:55
Original commit files touched by this commit
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
1.50
07 Mar 2003 05:56:43
Original commit files touched by this commit
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
06 Aug 2001 15:41:58
commit hash: fp1.16896@dev.null.freshports.orgcommit hash: fp1.16896@dev.null.freshports.orgcommit hash: fp1.16896@dev.null.freshports.orgcommit hash: fp1.16896@dev.null.freshports.org files touched by this commit
wjv search for other commits by this committer
Add coalesce 1.50, a program to fit population models.    

Number of commits found: 9