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Port details
coalesce 1.50 biology Deleted on this many watch lists=0 search for ports that depend on this port
Deprecated DEPRECATED: distfile disappeared from homepage
Expired This port expired on: 2007-01-07
A program to fit population models

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 06 Aug 2001 11:41:58
License: not specified in port


Coalesce fits the model which has a single population of constant size, and
estimates 4Nu, where N is the effective population size and u is the neutral
mutation rate per site

Coalesce forms part of the Lamarc (Likelihood Analysis with Metropolis
Algorithm using Random Coalescence) suite.  See:

  http://evolution.genetics.washington.edu/lamarc.html

WWW:    http://evolution.genetics.washington.edu/lamarc/recombine.html

-- Johann Visagie <wjv@FreeBSD.org>
SVNWeb : Main Web Site : Distfiles Availability : PortsMonThere are no ports dependent upon this port

No installation instructions: this port has been deleted.

The package name of this deleted port was: coalesce


Configuration Options
     No options to configure

Master Sites:
  1. ftp://evolution.genetics.washington.edu/pub/lamarc/coalesce/
  2. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Number of commits found: 9

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
25 Jan 2007 11:25:40
Original commit files touched by this commit  1.50
vd search for other commits by this committer
Remove expired leaf port:
2007-01-07 biology/coalesce: distfile disappeared from homepage

Actually the software is still available at:
http://evolution.gs.washington.edu/lamarc/coalesce.html, but it is
not supported by the authors. Last version is from 1995 and
biology/fluctuate can be used instead.
10 Dec 2006 12:36:54
Original commit files touched by this commit  1.50
gabor search for other commits by this committer
- Deprecate
- Set EXPIRATION_DATE

Approved by:    erwin (mentor)
24 Nov 2005 00:04:00
Original commit files touched by this commit  1.50
pav search for other commits by this committer
- Add SHA256
18 Feb 2005 12:58:07
Original commit files touched by this commit  1.50
krion search for other commits by this committer
Fix unfetchable tarball, it was renamed and relocated on original
server.

PR:             ports/77674
Submitted by:   Sam Lawrance <boris at brooknet.com.au>
20 Nov 2004 08:09:49
Original commit files touched by this commit  1.50
linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
31 Mar 2004 03:12:58
Original commit files touched by this commit  1.50
trevor search for other commits by this committer
SIZEify (maintainer timeout)
22 Oct 2003 09:29:55
Original commit files touched by this commit  1.50
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
07 Mar 2003 05:56:43
Original commit files touched by this commit  1.50
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
06 Aug 2001 15:41:58
files touched by this commit
wjv search for other commits by this committer
Add coalesce 1.50, a program to fit population models.    

Number of commits found: 9

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