consed 16.0 biology =0

RESTRICTED: Redistribution is not permitted in any form. You must request access permission via e-mail to get the tarball. Free for academic use.
A graphical tool for editing Phrap assemblies
Maintained by: mzaki@biol.s.u-tokyo.ac.jp
Port Added: 24 May 2008 07:01:28
License: not specified in port

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Consed is a tool for viewing and editing sequence assemblies made by phrap,
and includes Autofinish which will automatically choose finishing reads.

WWW: http://www.phrap.org/consed/consed.html

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: lang/perl5.8
Required To Run: biology/phred, biology/phrap, biology/phd2fasta, emulators/linux_base-f10, textproc/linux-f10-expat, x11-fonts/linux-f10-fontconfig, x11/linux-f10-xorg-libs, lang/perl5.8
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/consed/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

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Configuration Options

     No options to configure

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Master Sites:

http://www.phrap.org/consed/distributions/16.0/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Get Rid MD5 support

Welcome to the new linux ports infrastructure which allows using
both current (fc4) and future linux (f8) distributions at one
ports tree.

The patch contains full changes to ports/Mk files and all ports involved.
But only infrastructure is changed. The resulting packages are the same as
before. Hence no need to bump PORTREVISIONs.

The idea was taken from bsd.gnome.mk and others.

More than 130 ports are switched to follow a new linux infrastructure
introduced by changes to bsd.port.mk, bsd.linux-rpm.mk and a new
bsd.linux-apps.mk.

Thanks for all who was involved and helped me with this work.
And help from Alexander Leidinger was incredible.

Other changes are coming. Stay tuned!

PR:             ports/132510
Submitted by:   bsam (me)
Exp-run by:     portmgr (pav)

Teach the building cluster that these ports are not to be build

New port: biology/consed viewing and editing workbench for sequence
assembly

        Consed is a tool for viewing, editing, and finishing sequence
assemblies.

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities