20:51 antoine 

Deprecate ports broken for more than 6 months

 

12:48 antoine 

Mark a few ports BROKEN, unfetchable

 

19:23 tijl 

- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with
  Mk/Uses/linux.mk.
- Replace USE_LINUX=yes with USES+=linux and USE_LINUX=(.*) with
  USES+=linux:\1 in all ports.
- Replace USE_LINUX_APPS with USE_LINUX in all ports.
- Use INSTALL_SCRIPT instead of INSTALL_PROGRAM to install scripts in some
  ports.
- When USE_LINUX_RPM is defined, simplify the way DISTFILES and EXTRACT_ONLY
  are defined.
- Remove BRANDELF_DIRS and BRANDELF_FILES handling.  In the very rare cases
  that it is still necessary ports can run ${BRANDELF} from post-patch.
- Remove AUTOMATIC_PLIST handling.  Only one port used it.
- Fix Linux MASTER_SITES.
- Replace OVERRIDE_LINUX_BASE_PORT and OVERRIDE_LINUX_NONBASE_PORTS with
  default versions framework.
- bsd.port.mk:
  - Move Linux related bits to Uses/linux.mk, except USE_LINUX_PREFIX.
  - Put USE_LINUX_PREFIX handling after USES processing.
  - Define DOCSDIR, DATADIR, etc. after handling USE_LINUX_PREFIX so it can
    give these variables a different default value.
  - When a package needs to run Linux ldconfig check before installation if
    Linux support is enabled.
- emulators/linux_base-*:
  - Use USES=linux and remove duplication.
  - Remove files/lp.  FreeBSD or CUPS lp(1) should work.
  - Remove files/yp.conf.  No longer seems to be used.
  - Remove pkg-deinstall and move pkg-install into pkg-plist.
  - Update pkg-descr and pkg-message.
  - Fix handling of ldconfig cache in pkg-plist.
- devel/fb-adb: Use a Linux shell to run a Linux script but patch the script
  to use FreeBSD mkdir so mkdir -p $path creates $path and not
  /compat/linux/$path.

PR:		211645
Exp-run by:	antoine
Approved by:	portmgr (antoine)

 

13:29 mat 

Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight

 

13:26 rene 

biology/consed: undeprecate, it presumably builds fine but it is restricted.

Add a note to ports/LEGAL

 

19:35 antoine 

Deprecate ports broken for more than 6 months

 

14:49 mat 

${ENV} does not exist, it is called ${SETENV}.

 

17:55 bapt 

Mark as broken unfetchable ports

 

18:04 pi 

update ports:
	biology/phrab
	biology/phred
	biology/consed

Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.

PR:		191336
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)

 

19:11 adamw 

Convert a bunch of EXTRACT_SUFX=... into USES=tar:...

Approved by:	portmgr (not really, but touches unstaged ports)

 

11:21 olgeni 

Remove indefinite articles and trailing periods from COMMENT, plus
minor COMMENT typos and surrounding whitespace fixes. Categories A-C.

CR:		D196
Approved by:	portmgr (bapt)

 

18:07 antoine 

Replace maintainer's email address with one that seems to work

With hat:	portmgr

 

13:35 ehaupt 

Remove trailing whitespaces from category biology

 

13:54 ehaupt 

According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)

 

15:46 adamw 

Convert biology to MDOCS and MEXAMPLES

 

15:55 bapt 

Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)

 

07:44 az 

- convert to the new perl5 framework

Approved by:	portmgr (bapt@, blanket)

 

17:28 bsam 

Welcome to the new linux ports infrastructure which allows using
both current (fc4) and future linux (f8) distributions at one
ports tree.

The patch contains full changes to ports/Mk files and all ports involved.
But only infrastructure is changed. The resulting packages are the same as
before. Hence no need to bump PORTREVISIONs.

The idea was taken from bsd.gnome.mk and others.

More than 130 ports are switched to follow a new linux infrastructure
introduced by changes to bsd.port.mk, bsd.linux-rpm.mk and a new
bsd.linux-apps.mk.

Thanks for all who was involved and helped me with this work.
And help from Alexander Leidinger was incredible.

Other changes are coming. Stay tuned!

PR:             ports/132510
Submitted by:   bsam (me)
Exp-run by:     portmgr (pav)

23:05 edwin 

Teach the building cluster that these ports are not to be build

07:00 edwin 

New port: biology/consed viewing and editing workbench for sequence
assembly

        Consed is a tool for viewing, editing, and finishing sequence
assemblies.

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>