FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

non port: head/biology/consed/files/patch-scripts_determineReadTypes.perl
SVNWeb

Number of commits found: 2

Sat, 23 Aug 2014
[ 18:04 pi ] Original commit   Revision:365765
365765 biology/consed/Makefile
365765 biology/consed/distinfo
365765 biology/consed/files/patch-installConsed.perl
365765 biology/consed/files/patch-scripts_addReads2Consed.perl
365765 biology/consed/files/patch-scripts_determineReadTypes.perl
365765 biology/consed/files/patch-scripts_phredPhrap
365765 biology/consed/files/pkg-message.in
365765 biology/consed/pkg-plist.examples
365765 biology/phrap/Makefile
365765 biology/phrap/distinfo

(Only the first 10 of 31 ports in this commit are shown above. View all ports for this commit)
update ports:
	biology/phrab
	biology/phred
	biology/consed

Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.

PR:		191336
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
Sat, 24 May 2008
[ 07:00 edwin ] Original commit 
1.98 biology/Makefile
1.1 biology/consed/Makefile
1.1 biology/consed/distinfo
1.1 biology/consed/files/patch-misc_mktrace.c
1.1 biology/consed/files/patch-scripts_addReads2Consed.perl
1.1 biology/consed/files/patch-scripts_determineReadTypes.perl
1.1 biology/consed/files/patch-scripts_phredPhrap
1.1 biology/consed/pkg-descr
1.1 biology/consed/pkg-plist.examples
New port: biology/consed viewing and editing workbench for sequence
assembly

        Consed is a tool for viewing, editing, and finishing sequence
assemblies.

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found: 2

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
phpmyadminJan 24
intel-nvmupdateJan 23
php56*Jan 20
php70*Jan 20
icoutilsJan 19
mysql55-serverJan 18
mysql56-serverJan 18
mysql57-serverJan 18
powerdnsJan 18
powerdns-recursorJan 18
groovyJan 15
irssi*Jan 15
mysql57-client*Jan 15
mysql57-server*Jan 15
rabbitmqJan 15

18 vulnerabilities affecting 59 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 27904
Broken 292
Deprecated 125
Ignore 549
Forbidden 1
Restricted 204
No CDROM 83
Vulnerable 69
Expired 11
Set to expire 115
Interactive 0
new 24 hours 78
new 48 hours90
new 7 days273
new fortnight347
new month965

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.