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Port details
embassy 5.0.0 biology on this many watch lists=0 search for ports that depend on this port
A collection of contributed EMBOSS applications
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 26 Nov 2004 16:35:20


EMBASSY is a collection of contributed EMBOSS software. From the web
pages:

 "EMBOSS is GPL licensed. The libraries are under the Lesser GPL (LGPL).
 Programs which have been included from third parties who have their own
 licencing terms are kept apart under the EMBASSY grouping.

 This allows the EMBOSS libraries to link to other software, and only
 requires that software to have an LGPL-compatible licence. Phylip, for
 example, fits this model.

 But, to the user they do look exactly like EMBOSS aplications."

WWW: http://emboss.sourceforge.net/apps/#Embassy
CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon
Required To Build: devel/gmake, x11/libX11, x11/libXpm
Required To Run: x11/libX11, x11/libXpm
Required Libraries: biology/emboss, converters/libiconv, x11-toolkits/open-motif

To install the port: cd /usr/ports/biology/embassy/ && make install clean
To add the package: pkg_add -r embassy


Configuration Options
===> The following configuration options are available for embassy-5.0.0:
     DOMAINATRIX=on (default) "Protein domain apps"
     DOMALIGN=on (default) "Protein domain apps"
     DOMSEARCH=on (default) "Protein domain apps"
     SIGNATURE=on (default) "Protein domain apps"
     STRUCTURE=on (default) "Protein domain apps"
     EMNU=on (default) "EMBOSS simple menu"
     ESIM4=on (default) "Align cDNA/EST to genome"
     HMMER=on (default) "HMM alignment and searches"
     MEME=on (default) "Motif detection"
     MSE=on (default) "A multiple sequence screen editor"
     MYEMBOSS=on (default) "Examples for developers of EMBOSS apps"
     PHYLIP=on (default) "Phylogeny inference"
     TOPO=on (default) "Transmembrane display"
     VIENNA=on (default) "RNA folding"
===> Use 'make config' to modify these settings

Master Sites:
ftp://emboss.open-bio.org/pub/EMBOSS/
ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/
ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/emboss/
Notes from UPDATING
These upgrade notes are taken from /usr/ports/UPDATING
  • 2006-03-31
    Affects: users of biology/emboss and biology/embassy
    Author: fernan@iib.unsam.edu.ar
    Reason: 
      Since EMBOSS-3.0.0 both EMBOSS and EMBASSY install by default into
      $LOCALBASE/emboss to avoid conflicts with other ports.
    
      Users upgrading to 3.0.0 should take this into consideration when
      planning the upgrade, because it will involve moving data not
      installed by the port (databases) and tweaking the emboss.defaults
      config file.
    
      If you want to install the ports into $LOCALBASE (/usr/local, the old
      behavior), you can still do so by setting PREFIX manually. But you
      will have to take care of conflicting ports yourself.
    
    

Number of commits found: 11

Commit History - (may be incomplete: see CVSWeb link above for full details)
DateByDescription
13 Apr 2008 08:22:42
Original commit files touched by this commit  5.0.0
rafan search for other commits by this committer
- Update to 5.0.0

PR:             ports/122437
Submitted by:   Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
23 Mar 2008 16:44:09
Original commit files touched by this commit  3.0.0_2
miwi search for other commits by this committer
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Bump PORTREVISION

Approved by:    portmgr (xorg cleanup)
19 May 2007 21:32:57
Original commit files touched by this commit  3.0.0_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
28 Mar 2007 18:32:00
Original commit files touched by this commit  3.0.0
pav search for other commits by this committer
- Fix after objformat removal

Reported by:    pointyhat
31 Mar 2006 10:43:22
Original commit files touched by this commit  3.0.0
thierry search for other commits by this committer
For EMBOSS:

        This patch brings EMBOSS up to date with the current version.

        i.   The patches included in files/ are bugfixes for files in
             EMBOSS-3.0.0 that appeared after the release. They are
             documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README

             This is just 'for the record' so that we remember to remove these
             patches in the next update.

        ii.  EMBOSS is now installed by default in LOCALBASE/emboss
             This is to avoid CONFLICTS with other ports that install files
             with the same names. Installing EMBOSS to another PREFIX is also
             possible.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
26 Jan 2006 04:11:16
Original commit files touched by this commit  2.10.0
kris search for other commits by this committer
Add missing USE_ICONV
22 Jan 2006 08:20:34
Original commit files touched by this commit  2.10.0
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
29 May 2005 19:26:25
Original commit files touched by this commit  2.10.0
pav search for other commits by this committer
- Update to 2.10.0

Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
11 Dec 2004 23:32:32
Original commit files touched by this commit  2.9.0
pav search for other commits by this committer
- Fix OPTIONS handling

Pointy hat to:  sem
04 Dec 2004 01:45:38
Original commit files touched by this commit  2.9.0
kris search for other commits by this committer
BROKEN: Broken distinfo file
26 Nov 2004 16:34:22
Original commit files touched by this commit  2.9.0
sem search for other commits by this committer
[new port] biology/embassy

PR:             ports/74330
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>

Number of commits found: 11

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