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Port details
embassy 6.2.0_2 biology on this many watch lists=0 search for ports that depend on this port
Collection of contributed EMBOSS applications
Maintained by: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 26 Nov 2004 16:35:20
License: not specified in port


EMBASSY is a collection of contributed EMBOSS software. From the web
pages:

 "EMBOSS is GPL licensed. The libraries are under the Lesser GPL (LGPL).
 Programs which have been included from third parties who have their own
 licencing terms are kept apart under the EMBASSY grouping.

 This allows the EMBOSS libraries to link to other software, and only
 requires that software to have an LGPL-compatible licence. Phylip, for
 example, fits this model.

 But, to the user they do look exactly like EMBOSS aplications."

WWW: http://emboss.sourceforge.net/apps/#Embassy
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.

Required To Build:
  1. devel/gmake
  2. x11/libX11
  3. x11/libXpm
Required To Run:
  1. x11/libX11
  2. x11/libXpm
Required Libraries:
  1. biology/emboss
  2. converters/libiconv
  3. x11-toolkits/open-motif
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/embassy/ && make install clean
To add the package: pkg install biology/embassy


Configuration Options
===> The following configuration options are available for embassy-6.2.0_2:
     CBSTOOLS=on: CBS Tools
     DOMAINATRIX=on: Protein domain apps
     DOMALIGN=on: Protein domain apps
     DOMSEARCH=on: Protein domain apps
     EMNU=on: EMBOSS simple menu
     ESIM4=on: Align cDNA/EST to genome
     HMMER=on: HMM alignment and searches
     IPRSCAN=on: InterPro scan
     MEMENEW=on: Motif detection
     MIRA=on: Whole Genome shotgun and EST assembler
     MSE=on: A multiple sequence screen editor
     MYEMBOSS=on: Examples for developers of EMBOSS apps
     PHYLIPNEW=on: Phylogeny inference
     SIGNATURE=on: Protein domain apps
     STRUCTURE=on: Protein domain apps
     TOPO=on: Transmembrane display
     VIENNA=on: RNA folding
===> Use 'make config' to modify these settings

Master Sites:
  1. ftp://emboss.open-bio.org/pub/EMBOSS/
  2. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/emboss/

Number of commits found: 30

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
15 Jan 2014 22:48:32
Original commit files touched by this commit  6.2.0_2
Revision:339842
bapt search for other commits by this committer
Reduce over inclusion of bsd.port.mk
11 Dec 2013 14:43:51
Original commit files touched by this commit  6.2.0_2
Revision:336171
bapt search for other commits by this committer
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
20 Sep 2013 15:55:44
Original commit files touched by this commit  6.2.0_2
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
09 Jul 2013 21:49:36
Original commit files touched by this commit  6.2.0_2
Revision:322587
bapt search for other commits by this committer
Convert from USE_MOTIF to USES=motif
While here:
- trim headers
- Remove indefinite article from comment
- convert USE_GMAKE to USES=gmake
27 Apr 2013 08:50:47
Original commit files touched by this commit  6.2.0_2
Revision:316654
mva search for other commits by this committer
- Convert USE_ICONV=yes to USES=iconv
- Change USE_GNOME=pkgconfig|gnomehack to USES=pathfix|pkgconfig while here

Reviewed by:	bapt, kwm
18 Mar 2013 23:35:02
Original commit files touched by this commit  6.2.0_2
Revision:314609
jgh search for other commits by this committer
- adopt optionsNG
- trim historical header
- tighten COMMENT

Approved by:	portmgr (miwi)
01 Oct 2012 14:55:55
Original commit files touched by this commit  6.2.0_2
Revision:305131
wen search for other commits by this committer
- Take maintainership
01 Oct 2012 14:45:17
Original commit files touched by this commit  6.2.0_2
Revision:305130
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
01 Jun 2012 05:26:28
Original commit files touched by this commit  6.2.0_2
dinoex search for other commits by this committer
- update png to 1.5.10
23 Sep 2011 22:26:39
Original commit files touched by this commit  6.2.0_1
amdmi3 search for other commits by this committer
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav
02 May 2011 12:44:53
Original commit files touched by this commit  6.2.0_1
makc search for other commits by this committer
Bump PORTREVISION after open-mofit update
19 Mar 2011 12:38:54
Original commit files touched by this commit  6.2.0
miwi search for other commits by this committer
- Get Rid MD5 support
07 Apr 2010 01:21:36
Original commit files touched by this commit  6.2.0
wen search for other commits by this committer
- Update to 6.2.0

Submitted by:   Wen Heping(myself)
Approved by:    maintainer(via Email)
28 Mar 2010 06:47:48
Original commit files touched by this commit  6.0.0_3
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
05 Feb 2010 11:46:55
Original commit files touched by this commit  6.0.0_2
dinoex search for other commits by this committer
- update to jpeg-8
14 Aug 2009 08:33:22
Original commit files touched by this commit  6.0.0_1
miwi search for other commits by this committer
- Update MASTER_SITES

PR:             137750
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
31 Jul 2009 13:57:52
Original commit files touched by this commit  6.0.0_1
dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
16 Jun 2009 22:42:34
Original commit files touched by this commit  6.0.0
amdmi3 search for other commits by this committer
- Update to 6.0.0
- Unbreak

PR:             135376
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
23 Mar 2009 21:56:39
Original commit files touched by this commit  5.0.0
miwi search for other commits by this committer
- Mark BROKEN does not compile

Submitted by:   maintainer via private mail
13 Apr 2008 07:22:42
Original commit files touched by this commit  5.0.0
rafan search for other commits by this committer
- Update to 5.0.0

PR:             ports/122437
Submitted by:   Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
23 Mar 2008 16:44:09
Original commit files touched by this commit  3.0.0_2
miwi search for other commits by this committer
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Bump PORTREVISION

Approved by:    portmgr (xorg cleanup)
19 May 2007 20:32:57
Original commit files touched by this commit  3.0.0_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
28 Mar 2007 17:32:00
Original commit files touched by this commit  3.0.0
pav search for other commits by this committer
- Fix after objformat removal

Reported by:    pointyhat
31 Mar 2006 09:43:22
Original commit files touched by this commit  3.0.0
thierry search for other commits by this committer
For EMBOSS:

        This patch brings EMBOSS up to date with the current version.

        i.   The patches included in files/ are bugfixes for files in
             EMBOSS-3.0.0 that appeared after the release. They are
             documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README

             This is just 'for the record' so that we remember to remove these
             patches in the next update.

        ii.  EMBOSS is now installed by default in LOCALBASE/emboss
             This is to avoid CONFLICTS with other ports that install files
             with the same names. Installing EMBOSS to another PREFIX is also
             possible.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
26 Jan 2006 04:11:16
Original commit files touched by this commit  2.10.0
kris search for other commits by this committer
Add missing USE_ICONV
22 Jan 2006 08:20:34
Original commit files touched by this commit  2.10.0
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
29 May 2005 18:26:25
Original commit files touched by this commit  2.10.0
pav search for other commits by this committer
- Update to 2.10.0

Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
11 Dec 2004 23:32:32
Original commit files touched by this commit  2.9.0
pav search for other commits by this committer
- Fix OPTIONS handling

Pointy hat to:  sem
04 Dec 2004 01:45:38
Original commit files touched by this commit  2.9.0
kris search for other commits by this committer
BROKEN: Broken distinfo file
26 Nov 2004 16:34:22
Original commit files touched by this commit  2.9.0
sem search for other commits by this committer
[new port] biology/embassy

PR:             ports/74330
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>

Number of commits found: 30

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