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non port: biology/emboss/pkg-plist

Number of commits found: 29

Friday, 24 Sep 2021
21:34 Jason W. Bacon (jwb) search for other commits by this committer
biology/emboss: Add "emboss" command in ${LOCALBASE}/bin

Standard emboss commands are installed under a special prefix because
of multiple conflicts.  The emboss command turns the standard commands
into subcommands, so no special PATH is needed.

    /usr/local/emboss/bin/needle [args]

can be run as

    emboss needle [args]
commit hash: c68b6dc6448c618b79c8d1800d25b789b1b01a90 commit hash: c68b6dc6448c618b79c8d1800d25b789b1b01a90 commit hash: c68b6dc6448c618b79c8d1800d25b789b1b01a90 commit hash: c68b6dc6448c618b79c8d1800d25b789b1b01a90 c68b6dc
Monday, 6 Sep 2021
15:13 Jason W. Bacon (jwb) search for other commits by this committer
biology/emboss: Put emboss-shell in default PATH

PREFIX is overridden by default in the port Makefile, so PREFIX/bin
is not normally in PATH.  The purpose of emboss-shell is to prepend
PREFIX/bin to PATH to give access to emboss tools.

Also fix tcsh detection.

PR:             258316
commit hash: e47c577da6ce40e629041a92a327d9648ef72bd0 commit hash: e47c577da6ce40e629041a92a327d9648ef72bd0 commit hash: e47c577da6ce40e629041a92a327d9648ef72bd0 commit hash: e47c577da6ce40e629041a92a327d9648ef72bd0 e47c577
14:21 Jason W. Bacon (jwb) search for other commits by this committer
biology/emboss: Add emboss-shell: Run subshell with proper PATH

Also silence portlint and stage-qa warnings

PR:             258316
Approved by:    wen
commit hash: fa2e0b8c66d459b05b1a6624cd482950f9ea3376 commit hash: fa2e0b8c66d459b05b1a6624cd482950f9ea3376 commit hash: fa2e0b8c66d459b05b1a6624cd482950f9ea3376 commit hash: fa2e0b8c66d459b05b1a6624cd482950f9ea3376 fa2e0b8
Monday, 20 Oct 2014
07:10 bapt search for other commits by this committer
Cleanup plist
Original commitRevision:371237 
Thursday, 5 Jun 2014
03:28 miwi search for other commits by this committer
- Update to 6.6.0
- Stage support

PR:		190508
Submitted by:	Muhammad Moinur Rahman
Original commitRevision:356575 
Wednesday, 7 Apr 2010
01:16 wen search for other commits by this committer
- Update to 6.2.0

Submitted by:   Wen Heping(myself)
Approved by:    maintainer(via Email)
Original commit
Saturday, 14 Mar 2009
15:16 miwi search for other commits by this committer
- Force commit to correct the entry
- Update to 6.0.1

PR:             132504
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
Original commit
15:14 miwi search for other commits by this committer
- Update to 0.1.24

PR:             132527
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
Original commit
Sunday, 13 Apr 2008
07:22 rafan search for other commits by this committer
- Update to 5.0.0

PR:             ports/122437
Submitted by:   Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
Original commit
07:21 rafan search for other commits by this committer
- Sort pkg-plist before updating to 5.0.0

PR:             ports/122437
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Friday, 31 Mar 2006
09:43 thierry search for other commits by this committer
For EMBOSS:

        This patch brings EMBOSS up to date with the current version.

        i.   The patches included in files/ are bugfixes for files in
             EMBOSS-3.0.0 that appeared after the release. They are
             documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README

             This is just 'for the record' so that we remember to remove these
             patches in the next update.

        ii.  EMBOSS is now installed by default in LOCALBASE/emboss
             This is to avoid CONFLICTS with other ports that install files
             with the same names. Installing EMBOSS to another PREFIX is also
             possible.

        iii. now EMBASSY and EMBOSS both store their distfiles in the same
             DIST_SUBDIR

        iv.  use built-in PKGMESSAGE and SUB_FILES instead of doing it the old
             (manual) way

        For EMBASSY:

        This update brings embassy in sync with the update of EMBOSS to 3.0.0.

        Things that changed from previous version of the port:

        i.  embassy now installs by default in $LOCALBASE/emboss (the
            new default PREFIX for emboss as well).

        ii. changed DIST_SUBDIR so that all the distfiles are put together with
            emboss. This makes sense(TM)

        iii. incorporated new EMBASSY apps (this accounts for the changes in
             OPTIONS and pkg-plist)

        iv.  removed obsoleted patches

        Finally, I included a sample text that could go in UPDATING.

PR:             93053
Submitted by:   Fernan Aguero <fernan (at) iib.unsam.edu.ar> (maintainer)
Original commit
Thursday, 23 Feb 2006
10:40 ade search for other commits by this committer
Conversion to a single libtool environment.

Approved by:    portmgr (kris)
Original commit
Sunday, 29 May 2005
18:26 pav search for other commits by this committer
- Update to 2.10.0

PR:             ports/81579
Submitted by:   "Choe, Cheng-Dae" <whitekid@gmail.com>
Approved by:    Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Friday, 26 Nov 2004
01:11 sem search for other commits by this committer
- Update to 2.9.0
- Pass maintainership to submitter

PR:             ports/74333
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>
Original commit
00:25 kris search for other commits by this committer
Add missing files
Original commit
Friday, 5 Jul 2002
10:09 wjv search for other commits by this committer
- Update to version 2.4.1
- Unmark BROKEN
- Start adding support for Jemboss Java-based GUI (not active yet)

PR:             40198 ; many private requests
Submitted by:   Tilman Linneweh <tilman@arved.de> (2.4.1 update)
Original commit
Friday, 18 Jan 2002
14:04 wjv search for other commits by this committer
- Update to version 2.2.0   - Update included EMBASSY package EMNU   - Fix a
long-standing bug in Makefile that would preclude PKGMESSAGE from     being
generated properly   - Consider this an interim update merely to track the
latest version - more     work is required to activate the newly included
"Jemboss" Java GUI     interface    
Original commit
Friday, 3 Aug 2001
12:32 wjv search for other commits by this committer
- Update port to version 2.0.1   - Add two new EMBASSY applications, MEME and
HMMER.    
Original commit
Friday, 15 Jun 2001
13:11 wjv search for other commits by this committer
Update to 1.13.3; remove bogus file.    
Original commit
Wednesday, 30 May 2001
15:34 kevlo search for other commits by this committer
Update to version 1.13.1    
Original commit
Monday, 7 May 2001
13:18 jeh search for other commits by this committer
Update the EMBOSS suite (biology/emboss) to version 1.12.0    
Original commit
Monday, 12 Mar 2001
10:33 nbm search for other commits by this committer
Update the EMBOSS suite to v1.11.0    
Original commit
Wednesday, 28 Feb 2001
15:58 kevlo search for other commits by this committer
Update to version 1.10.1    
Original commit
Tuesday, 20 Feb 2001
15:51 kevlo search for other commits by this committer
Update to version 1.10.0    
Original commit
Monday, 29 Jan 2001
15:48 kevlo search for other commits by this committer
- Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1   - Update the EMBASSY
package EMNU from 1.0.2 to 1.0.3   - Merged the four pkg-plist* files into one  
 
Original commit
Wednesday, 24 Jan 2001
11:36 kevlo search for other commits by this committer
Upgrade to version 1.9.0    
Original commit
Tuesday, 28 Nov 2000
01:43 jeh search for other commits by this committer
- Update port biology/emboss from 1.7.0 to 1.8.0    
Original commit
Wednesday, 1 Nov 2000
11:49 jeh search for other commits by this committer
Update to version 1.7.0    
Original commit
Tuesday, 10 Oct 2000
05:54 kevlo search for other commits by this committer
- Update to 1.6.0   - Reorder packing list    
Original commit

Number of commits found: 29