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Port details
fasta3 35.3.6 biology on this many watch lists=1 search for ports that depend on this port
NO CDROM NO CDROM: May not be sold or incorporated into a commercial product
A collection of programs for searching DNA and protein databases
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: 11 Feb 2001 13:29:00


Version 3 of the FASTA packages contains many programs for searching DNA and
protein databases and one program (prss3) for evaluating statistical
significance from randomly shuffled sequences.  Several additional analysis
programs, including programs that produce local alignments, are available as
part of version 2 of the FASTA package, which is available as the port
biology/fasta.

FASTA is described in:  W. R. Pearson and D. J. Lipman (1988), "Improved
Tools for Biological Sequence Analysis", PNAS 85:2444-2448; W. R.  Pearson
(1996) "Effective protein sequence comparison" Meth. Enzymol.  266:227-258;
Pearson et. al.  (1997) Genomics 46:24-36;  Pearson, (1999) Meth. in
Molecular Biology 132:185-219.

The FASTA3 suite is distributed freely subject to the condition that it may
not be sold or incorporated into a commercial product.

Author: William R Pearson <wrp@virginia.edu>
WWW:    http://fasta.bioch.virginia.edu/

-- Johann Visagie <johann@egenetics.com>
CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

To install the port: cd /usr/ports/biology/fasta3/ && make install clean
To add the package: pkg_add -r fasta3


Configuration Options
     No options to configure

Master Sites:
http://faculty.virginia.edu/wrpearson/fasta/fasta3/
ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Number of commits found: 27

Commit History - (may be incomplete: see CVSWeb link above for full details)
DateByDescription
10 Apr 2008 09:09:10
Original commit files touched by this commit  35.3.6
clsung search for other commits by this committer
- Update to 35.3.6

PR:             ports/122607
Submitted by:   maintainer (Fernan Aguero)
30 Mar 2008 06:07:37
Original commit files touched by this commit  35.3.5
rafan search for other commits by this committer
- Update to 35.3.5
- Switch to .tar.gz distfile so that we don't define our do-extract
- While I'm here, using substitution for version numbers in pkg-plist
  for easier upgrade

PR:             ports/121690
Submitted by:   Wen heping <wenheping at gmail.com>
Approved by:    maintainer timeout (2 weeks)
09 Mar 2007 11:26:13
Original commit files touched by this commit  34.26.2
miwi search for other commits by this committer
- Update to 34.26.2

PR:             110079
Submitted by:   Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)
31 Oct 2006 09:02:04
Original commit files touched by this commit  34.t26.b3
miwi search for other commits by this committer
- Update to 34.t26.b3

PR:             ports/104508
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
09 Jun 2006 20:18:08
Original commit files touched by this commit  34.t25.d9
pav search for other commits by this committer
- Update to 34.t25.d9

PR:             ports/98761
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
05 Jun 2006 22:18:24
Original commit files touched by this commit  34.t25.d8
erwin search for other commits by this committer
- Update to 34.t25.d8 [1]
- While I'm here, pet portlint [2]

PR:             98398 [1]
Submitted by:   miwi [1], self [2]
Approved by:    maintainer [1]
24 May 2006 17:55:46
Original commit files touched by this commit  34.t25.d7
sem search for other commits by this committer
- update to 34.t25.d7
- add MASTER_SITE_LOCAL as a second master site

PR:             ports/97310
Submitted by:   maintainer
21 May 2006 22:32:08
Original commit files touched by this commit  34.t25.d6
kris search for other commits by this committer
BROKEN: Unfetchable
07 May 2006 17:52:33
Original commit files touched by this commit  34.t25.d6
sem search for other commits by this committer
- Update to 34.t25.d6

PR:             ports/96063
Submitted by:   maintainer
20 Mar 2006 22:23:24
Original commit files touched by this commit  34.t25.d5
pav search for other commits by this committer
- Update to 34.t25.d5

PR:             ports/94741
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
10 Feb 2006 09:37:02
Original commit files touched by this commit  34.t25.d4
lawrance search for other commits by this committer
Update to 34.t25.d4.

PR:             ports/93052
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
22 Jan 2006 08:20:34
Original commit files touched by this commit  33.t08.d4
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
01 Jul 2004 04:02:23
Original commit files touched by this commit  33.t08.d4
linimon search for other commits by this committer
Chase mastersite and fix checksum to unbreak.  (Changes are inclusion of a
logfile, one Linux-only change, and one change in a test script).  Assign
submitter as new maintainer as current one has not responded to PRs for
some time.

PR:             ports/68199
Submitted by:   Fernan Aguero <fernan at iib dot unsam dot edu dot ar>
21 Jun 2004 22:27:46
Original commit files touched by this commit  33.t08.d4
kris search for other commits by this committer
Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDEN
ports.  They will be removed on or after that date if they are still
broken and no fix has been submitted to GNATS.
31 Mar 2004 04:12:58
Original commit files touched by this commit  33.t08.d4
trevor search for other commits by this committer
SIZEify (maintainer timeout)
21 Feb 2004 19:31:10
Original commit files touched by this commit  33.t08.d4
kris search for other commits by this committer
BROKEN: Checksum mismatch
15 Nov 2003 20:13:21
Original commit files touched by this commit  33.t08.d4
marcus search for other commits by this committer
unPERLify by using REINPLACE_CMD and SED where appropriate.

PR:             47654
Submitted by:   Simon 'portlint' Schubert <corecode@corecode.ath.cx>
22 Oct 2003 10:29:55
Original commit files touched by this commit  33.t08.d4
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
07 Mar 2003 05:56:43
Original commit files touched by this commit  33.t08.d4
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
23 Aug 2002 04:36:33
Original commit files touched by this commit  33.t08.d4
kris search for other commits by this committer
Prefer <limits.h> over <values.h> as the latter has been removed from
-current.

Noticed by:     bento
03 Jul 2001 11:08:26
files touched by this commit
wjv search for other commits by this committer
Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.    
27 Jun 2001 12:15:02
files touched by this commit
wjv search for other commits by this committer
Updating my email address in my remaining ports.    
07 May 2001 14:16:33
files touched by this commit
jeh search for other commits by this committer
Updata biology/fasta3 to version 33.t08.d4    
22 Mar 2001 09:04:47
files touched by this commit
sobomax search for other commits by this committer
Update to 33.t08.d3.    
12 Mar 2001 10:24:38
files touched by this commit
nbm search for other commits by this committer
- A small bugfix lead to a rerelease without a version number change.   - Bumped
PORTREVISION.    
08 Mar 2001 14:39:17
files touched by this commit
sf search for other commits by this committer
update to 33.t08.d2.    
11 Feb 2001 16:29:00
files touched by this commit
jeh search for other commits by this committer
- New port: biology/fasta3, which comprises the FASTA3 suite of DNA and    
protein sequence search programs   - FASTA3 updates only some of the elements of
FASTA2, which is why I have     submitted ports of both versions (as
biology/fasta and biology/fasta3)    

Number of commits found: 27

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