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Port details
garlic Molecular viewer, editor, and visualization program
1.6_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: maho@FreeBSD.org search for ports maintained by this maintainer
Port Added: 28 Jul 2003 06:41:18
License: not specified in port
Free, open source molecular viewer and editor for
protein structure, DNA structure, PDB, molecular rendering,
biological macromolecule.
Atoms may be drawn as spheres of different sizes.
Bonds may be drawn as cylindrical sticks, conical sticks or
as curved surfaces.
Five types of slab are available: planar, spherical,
semi-spherical, cylindrical and semi-cylindrical.
The slab position and thickness are visible in a small window.
Atomic bonds as well as atoms are treated as independent drawable objects.
and more.

WWW: http://www.zucic.org/garlic/
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gmake : devel/gmake
  2. /usr/local/libdata/pkgconfig/x11.pc : x11/libX11
Runtime dependencies:
  1. /usr/local/libdata/pkgconfig/x11.pc : x11/libX11
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/garlic/ && make install clean
To add the package: pkg install biology/garlic


Configuration Options
===> The following configuration options are available for garlic-1.6_1:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
     OPTIMIZED_CFLAGS=off: Use extra compiler optimizations
===> Use 'make config' to modify these settings

Master Sites:
  1. http://distcache.FreeBSD.org/ports-distfiles/
  2. http://www.zucic.org/sources/garlic-1.6/

Number of commits found: 26

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
20 Oct 2014 07:10:48
Original commit files touched by this commit  1.6_1
Revision:371237
bapt search for other commits by this committer
Cleanup plist
17 Jul 2014 10:13:06
Original commit files touched by this commit  1.6_1
Revision:362131
marino search for other commits by this committer
biology/garlic: Stage properly to unbreak

The main problem was the WRKDIR is not within STAGEDIR.  Fix this while
moving all the directory creation steps into one.  While here
set TAR to use switches as outlined in its man page.

Also, the permission setting in stagedir is not necessary, so it's simply
been removed.
05 Jul 2014 00:15:40
Original commit files touched by this commit  1.6
Revision:360705
adamw search for other commits by this committer
Missed a NOPORTDOCS.
04 Jul 2014 23:46:53
Original commit files touched by this commit  1.6
Revision:360690
adamw search for other commits by this committer
Remove NOPORTDOCS and NOPORTEXAMPLES from unstaged ports. Stage a couple while
we're here. Remove any other references to NOPORT*.

Approved by:	portmgr (blanket for modernization)
13 Mar 2014 07:41:34
Original commit files touched by this commit  1.6
Revision:348042
miwi search for other commits by this committer
- Convert USE_GMAKE to USES
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.6
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
25 Jul 2012 06:32:08
Original commit files touched by this commit  1.6
cs search for other commits by this committer
Fix typos in COMMENT
11 May 2011 05:55:27
Original commit files touched by this commit  1.6
maho search for other commits by this committer
Update to 1.6. Web site has been moved.
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.5_2
miwi search for other commits by this committer
- Get Rid MD5 support
19 Apr 2008 17:56:05
Original commit files touched by this commit  1.5_2
  Sanity Test Failure
miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
24 Mar 2008 13:03:55
Original commit files touched by this commit  1.5_2
miwi search for other commits by this committer
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Bump PORTREVISION

Approved by:    portmgr (xorg cleanup)
19 May 2007 20:32:57
Original commit files touched by this commit  1.5_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
03 May 2006 23:26:35
Original commit files touched by this commit  1.5
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
15 Mar 2006 08:10:49
Original commit files touched by this commit  1.5
maho search for other commits by this committer
Update to 1.5

Submitted by:   distfile survey by kris, fenner
22 Jan 2006 08:20:34
Original commit files touched by this commit  1.4_2
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
12 Apr 2005 03:26:57
Original commit files touched by this commit  1.4_2
obrien search for other commits by this committer
At Kris's request, back out the MACHINE_ARCH spelling correction until
after 5.4-RELEASE.
11 Apr 2005 08:04:41
Original commit files touched by this commit  1.4_2
obrien search for other commits by this committer
Assist getting more ports working on AMD64 by obeying the
Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.
06 May 2004 19:49:54
Original commit files touched by this commit  1.4_2
maho search for other commits by this committer
Make portlint happy by replacing space to tab

PR:             65409
Submitted by:   trevor
18 Mar 2004 04:57:07
Original commit files touched by this commit  1.4_2
maho search for other commits by this committer
1) Silent version up without changing the version number
   very minor change in README
2) change WWW: section at pkg-descr
3) SIZEify

Submitted by:   kris via bento
22 Feb 2004 00:42:32
Original commit files touched by this commit  1.4_2
kris search for other commits by this committer
BROKEN: Checksum mismatch
04 Feb 2004 05:21:48
Original commit files touched by this commit  1.4_2
marcus search for other commits by this committer
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)
28 Dec 2003 08:02:14
Original commit files touched by this commit  1.4_1
maho search for other commits by this committer
silent updates of archives:
a) program: Draw the hydrophobicity function F5
b) documentation: add very minor description not
   related FreeBSD.

1) bump portrevision
2) several clean ups for Makefile
22 Oct 2003 09:29:55
Original commit files touched by this commit  1.4
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
01 Sep 2003 22:00:01
Original commit files touched by this commit  1.4
maho search for other commits by this committer
Silent changes to the port distfile which *not* have significant
functional differences.
just changing very minor change of documatation, adding very minor
functionality and some cleanup for coding

Submitted by:   bento's log
31 Jul 2003 08:06:09
Original commit files touched by this commit  1.4
maho search for other commits by this committer
Add USE_XLIB=yes to compile

Submitted by:   kris via bento
28 Jul 2003 06:38:37
Original commit files touched by this commit  1.4
maho search for other commits by this committer
A new port garlic, free molecular viewer and editor, free molecular
visualization program, protein structure, DNA structure, PDB,
molecular rendering, biological macromolecule.

Number of commits found: 26

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