genpak 0.26_7 biology =0

A set of small utilities to manipulate DNA sequences

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
Port Added: 27 Feb 2001 23:46:53
License: not specified in port

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GP is a set of small utilities written in ANSI C to manipulate DNA
sequences in a Unix fashion, fit for combining within shell and cgi
scripts.

The sequences are usually in fasta format, that means the first line
is the sequence name starting with ">", and the sequence comes in the
next lines. The programs accept also gzipped sequence files.

WWW: http://www.bioinformatics.org/genpak/#gp

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: devel/gmake
Required Libraries: graphics/gd
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/genpak/ && make install clean
To add the package: pkg_add -r genpak

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Configuration Options

     No options to configure

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Master Sites:

http://www.bioinformatics.org/genpak/download/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Get Rid MD5 support

- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi

- update to jpeg-8

- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin

- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default
MAKE_ENV

- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

- Add SHA256

Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)

Add SIZE.

o Main modification
  graphics/gd(based on 1.8.4)    -> graphics/gd1
  graphics/gd2(based on 2.0.15)  -> graphics/gd
  graphics/p5-GD(based on 1.41)  -> graphics/p5-GD1
  graphics/p5-GD2(based on 2.07) -> graphics/p5-GD
  japanese/gd                    -> japanese/gd1
  japanese/gd2                   -> japanese/gd
o Include some feature
  WITH_XPM(w/, w/o WITHOUT_X11)
o Chase this modification
o Fix build error [1]

PR:             ports/54540
Submitted by:   Ports Fury
Approved by:    maintainer (blanket)
Reported by:    bento via kris [1]

o Change library name from libgd to libgd1.
o Do not install everything except headers and libraries
  (to avoid conflicting with graphics/gd2)
o Fix dependency on new libgd1(for many ports).

PR:             ports/54100
Submitted by:   Ports Fury

De-pkg-comment.

Bump png major    

upgrade to 0.26   drop maintainership    

gd.2, not gd.1    

reimport biology/genpak    

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

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