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Port details
genpak Utilities to manipulate DNA sequences
0.26_9 biology Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Deprecated DEPRECATED: Unmaintained since 2001
Expired This port expired on: 2014-04-12

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 27 Feb 2001 23:46:53
License: not specified in port
GP is a set of small utilities written in ANSI C to manipulate DNA
sequences in a Unix fashion, fit for combining within shell and cgi
scripts.

The sequences are usually in fasta format, that means the first line
is the sequence name starting with ">", and the sequence comes in the
next lines. The programs accept also gzipped sequence files.

WWW: http://www.bioinformatics.org/genpak/#gp
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gmake : devel/gmake
Library dependencies:
  1. libgd.so : graphics/gd
There are no ports dependent upon this port

No installation instructions: this port has been deleted.

The package name of this deleted port was: genpak


Configuration Options
===> The following configuration options are available for genpak-0.26_9:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. http://www.bioinformatics.org/genpak/download/

Number of commits found: 24

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
13 Apr 2014 10:55:38
Original commit files touched by this commit  0.26_9
Revision:351202
rene search for other commits by this committer
Remove expired ports:
2014-04-12 net/pvm++: Unmaintained since 2001
2014-04-12 devel/ixlib: Unmaintained since 2001
2014-04-12 mail/althea: Unmaintained since 2001
2014-04-12 graphics/claraocr: Unmaintained since 2001
2014-04-12 graphics/qvplay: Unmaintained since 2001
2014-04-12 print/guitartex: Unmaintained since 2001
2014-04-12 print/pnm2ppa: Unmaintained since 2001
2014-04-12 graphics/opendis: Unmaintained since 2001
2014-04-12 net/gnome-mud: Unmaintained since 2001
2014-04-12 graphics/maverik: Unmaintained since 2001
2014-04-12 biology/rasmol: Unmaintained since 2001
2014-04-12 mail/mail2procmailrc: Unmaintained since 2001
2014-04-12 science/felt: Unmaintained since 2001
2014-04-12 textproc/pardiff: Unmaintained since 2001
(Only the first 15 lines of the commit message are shown above View all of this commit message)
08 Mar 2014 22:26:22
Original commit files touched by this commit  0.26_9
Revision:347539
antoine search for other commits by this committer
Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained
since more than 12 years)
21 Feb 2014 13:35:26
Original commit files touched by this commit  0.26_9
Revision:345397
ehaupt search for other commits by this committer
Remove trailing whitespaces from category biology
10 Feb 2014 13:54:28
Original commit files touched by this commit  0.26_9
Revision:343634
ehaupt search for other commits by this committer
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
09 Dec 2013 01:28:41
Original commit files touched by this commit  0.26_9
Revision:335949
adamw search for other commits by this committer
Respect PORT_OPTIONS:MDOCS
Clean up COMMENT
USES=gmake
20 Sep 2013 15:55:44
Original commit files touched by this commit  0.26_9
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
09 Aug 2013 14:05:53
Refresh Original commit files touched by this commit
Revision:324437  Sanity Test Failure
dinoex search for other commits by this committer
- update libdg to 2.1.0
01 Jun 2012 05:26:28
Original commit files touched by this commit  0.26_8
dinoex search for other commits by this committer
- update png to 1.5.10
19 Mar 2011 12:38:54
Original commit files touched by this commit  0.26_7
miwi search for other commits by this committer
- Get Rid MD5 support
28 Mar 2010 06:47:48
Original commit files touched by this commit  0.26_7
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
05 Feb 2010 11:46:55
Original commit files touched by this commit  0.26_6
dinoex search for other commits by this committer
- update to jpeg-8
31 Jul 2009 13:57:52
Original commit files touched by this commit  0.26_5
dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
25 Jul 2008 09:08:42
Original commit files touched by this commit  0.26_4
pav search for other commits by this committer
- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default
MAKE_ENV
19 May 2007 20:32:57
Original commit files touched by this commit  0.26_4
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
24 Nov 2005 00:04:00
Original commit files touched by this commit  0.26_3
pav search for other commits by this committer
- Add SHA256
04 Feb 2004 05:21:48
Original commit files touched by this commit  0.26_3
marcus search for other commits by this committer
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)
27 Jan 2004 20:51:07
Original commit files touched by this commit  0.26_2
trevor search for other commits by this committer
Add SIZE.
18 Aug 2003 16:15:11
Original commit files touched by this commit  0.26_2
nork search for other commits by this committer
o Main modification
  graphics/gd(based on 1.8.4)    -> graphics/gd1
  graphics/gd2(based on 2.0.15)  -> graphics/gd
  graphics/p5-GD(based on 1.41)  -> graphics/p5-GD1
  graphics/p5-GD2(based on 2.07) -> graphics/p5-GD
  japanese/gd                    -> japanese/gd1
  japanese/gd2                   -> japanese/gd
o Include some feature
  WITH_XPM(w/, w/o WITHOUT_X11)
o Chase this modification
o Fix build error [1]

PR:             ports/54540
Submitted by:   Ports Fury
Approved by:    maintainer (blanket)
Reported by:    bento via kris [1]
11 Jul 2003 18:16:14
Original commit files touched by this commit  0.26_1
nork search for other commits by this committer
o Change library name from libgd to libgd1.
o Do not install everything except headers and libraries
  (to avoid conflicting with graphics/gd2)
o Fix dependency on new libgd1(for many ports).

PR:             ports/54100
Submitted by:   Ports Fury
20 Feb 2003 16:51:35
Original commit files touched by this commit  0.26
knu search for other commits by this committer
De-pkg-comment.
11 Sep 2001 04:09:30
files touched by this commit
ache search for other commits by this committer
Bump png major    
09 Aug 2001 18:37:03
files touched by this commit
ijliao search for other commits by this committer
upgrade to 0.26   drop maintainership    
05 Mar 2001 07:39:06
files touched by this commit
ijliao search for other commits by this committer
gd.2, not gd.1    
28 Feb 2001 02:46:53
files touched by this commit
ijliao search for other commits by this committer
reimport biology/genpak    

Number of commits found: 24

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