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Port details
grappa Genome Rearrangements Analysis and Phylogeny Software
2.0 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 04 Jul 2001 05:39:40
License: GPLv2
GRAPPA: Genome Rearrangements Analysis under Parsimony and other
Phylogenetic Algorithms

This suite of programs implements the approach to phylogeny
reconstruction from gene orders described in the paper
   Moret, B.M.E., Wyman, S., Bader, D.A., Warnow, T., and Yan, M.,
   ``A detailed study of breakpoint analysis,''
   Proc. 6th Pacific Symp. Biocomputing PSB 2001, Hawaii (2001).
In its current state, "grappa" allows one to explore either the
space of all possible trees on n labelled leaves or the space of all
such trees that obey (are refinements of) a particular constraint tree.

"invdist" takes the first two genomes in the input file and returns
their inversion distance.
"distmat" prints the inversion and breakpoint distance matrices.

WWW: http://www.cs.unm.edu/~moret/GRAPPA/
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/grappa/ && make install clean
To add the package: pkg install grappa

PKGNAME: grappa

ONLY_FOR_ARCHS: nil

NOT_FOR_ARCHS: nil

distinfo:

SHA256 (GRAPPA20.tar.gz) = 19b3c5ab21c845eaf4fcf56fcf09a15db84597d8438155bb463d8f3e1bb51103
SIZE (GRAPPA20.tar.gz) = 172261


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gmake : devel/gmake
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
gmake

Master Sites:
  1. http://www.cs.unm.edu/~moret/GRAPPA/

Number of commits found: 18

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
19 May 2016 10:21:25
Original commit files touched by this commit  2.0
Revision:415498
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-descrs, categories [a-f]*

Approved by:	portmgr blanket
25 Sep 2015 18:55:08
Original commit files touched by this commit  2.0
Revision:397864
rm search for other commits by this committer
biology/grappa: define license (GPLv2)

As per the web site, the license for GRAPPA is GPLv2
https://www.cs.unm.edu/~moret/GRAPPA/

PR:		202426
Submitted by:	George <george@nycbug.org>
20 Dec 2013 13:27:13
Original commit files touched by this commit  2.0
Revision:337010
pawel search for other commits by this committer
- Respect CC/CFLAGS

PR:		ports/184857
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
10 Dec 2013 17:25:39
Original commit files touched by this commit  2.0
Revision:336071
bapt search for other commits by this committer
Support stage
USE_GMAKE -> USES=gmake
Respect CC
20 Sep 2013 15:55:44
Original commit files touched by this commit  2.0
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
11 Apr 2011 19:54:35
Original commit files touched by this commit  2.0
ade search for other commits by this committer
Update to GNU make 3.82 after numerous -exp runs.
19 Mar 2011 12:38:54
Original commit files touched by this commit  2.0
miwi search for other commits by this committer
- Get Rid MD5 support
13 Dec 2006 13:20:20
Original commit files touched by this commit  2.0
linimon search for other commits by this committer
Reset dbader@ece.unm.edu due to timeouts and no response to email.

Hat:            portmgr
03 May 2006 23:26:35
Original commit files touched by this commit  2.0
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
22 Jan 2006 08:20:34
Original commit files touched by this commit  2.0
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
15 Apr 2005 18:48:57
Original commit files touched by this commit  2.0
leeym search for other commits by this committer
- update grappa to 2.0
- utilize PLIST_FILES
- unbreak it on 4.x
- update maintainer's email

PR:             79241
Submitted by:   David A. Bader <dbader@ece.unm.edu>
17 Aug 2004 10:29:40
Original commit files touched by this commit  1.0.3_1
kris search for other commits by this committer
This is now buildable on 5.x, remove BROKEN.
31 Mar 2004 03:12:58
Original commit files touched by this commit  1.0.3_1
trevor search for other commits by this committer
SIZEify (maintainer timeout)
04 Feb 2004 05:21:48
Original commit files touched by this commit  1.0.3_1
marcus search for other commits by this committer
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)
19 Dec 2003 10:22:05
Original commit files touched by this commit  1.0.3
linimon search for other commits by this committer
Mark as broken on 5.x due to the usual gcc terminating-character hassles.
Notified mainatainer.
21 Feb 2003 11:01:38
Original commit files touched by this commit  1.0.3
knu search for other commits by this committer
De-pkg-comment.
29 Aug 2001 12:53:29
files touched by this commit
wjv search for other commits by this committer
- Update to version 1.0.3    
04 Jul 2001 09:39:40
files touched by this commit
wjv search for other commits by this committer
Add grappa 1.0.2, Genome Rearrangements Analysis and Phylogeny   Software.    

Number of commits found: 18

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