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Please give me your LTO-4 or better tape library and I'll put it to good use.
Port details
hmmer Profile hidden Markov models for biological sequence analysis
3.0_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwbacon@tds.net search for ports maintained by this maintainer
Port Added: unknown
License: GPLv3
HMMER is an implementation of profile hidden Markov model methods for
sensitive searches of biological sequence databases using multiple sequence
alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical
model called a "hidden Markov model" which can then be used as a query into
a sequence database to find (and/or align) additional homologues of the
sequence family.

WWW: http://hmmer.janelia.org/
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. perl5.18.4 : lang/perl5.18
Runtime dependencies:
  1. perl5.18.4 : lang/perl5.18
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/hmmer/ && make install clean
To add the package: pkg install biology/hmmer


Configuration Options
===> The following configuration options are available for hmmer-3.0_1:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings

USES:
perl5

Master Sites:
  1. ftp://selab.janelia.org/pub/software/hmmer3/3.0/
  2. http://distcache.FreeBSD.org/ports-distfiles/
  3. http://selab.janelia.org/software/hmmer3/3.0/

Number of commits found: 23

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
02 Apr 2015 15:41:32
Original commit files touched by this commit  3.0_1
Revision:383013
amdmi3 search for other commits by this committer
- Remove deprecated option
- Tweak compiler flags
- Add LICENSE
- Pass maintainership to submitter

PR:		199066
Submitted by:	jwbacon@tds.net
20 Oct 2014 07:10:48
Original commit files touched by this commit  3.0
Revision:371237
bapt search for other commits by this committer
Cleanup plist
15 Jul 2014 14:54:54
Original commit files touched by this commit  3.0
Revision:361934
adamw search for other commits by this committer
Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.

While here, use OPTIONS helpers and re-enable manpage installation.
30 Dec 2013 18:08:15
Original commit files touched by this commit  3.0
Revision:338155
antoine search for other commits by this committer
Stage support
20 Sep 2013 15:55:44
Original commit files touched by this commit  3.0
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
03 Aug 2013 08:45:52
Original commit files touched by this commit  3.0
Revision:324181
az search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header
20 Jul 2013 15:08:45
Original commit files touched by this commit  3.0
Revision:323349
wen search for other commits by this committer
- Update to 3.0
- Convert to optionsNG
- Drop maintainership
01 Oct 2012 14:55:55
Original commit files touched by this commit  2.3.2
Revision:305131
wen search for other commits by this committer
- Take maintainership
01 Oct 2012 14:45:17
Original commit files touched by this commit  2.3.2
Revision:305130
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
19 Mar 2011 12:38:54
Original commit files touched by this commit  2.3.2
miwi search for other commits by this committer
- Get Rid MD5 support
01 Feb 2009 08:17:14
Original commit files touched by this commit  2.3.2
pgollucci search for other commits by this committer
- Update download locations, update WWW

Reported by:    -fetch-original pointyhat run
22 Jan 2006 08:20:34
Original commit files touched by this commit  2.3.2
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
25 Nov 2004 22:58:29
Original commit files touched by this commit  2.3.2
sem search for other commits by this committer
- Remove a junk white space.
25 Nov 2004 22:35:52
Original commit files touched by this commit  2.3.2
sem search for other commits by this committer
- Update to 2.3.2
- Add WITH_PVM knob
- Pass maintainership to submitter

PR:             ports/74331
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>
20 Nov 2004 08:09:49
Original commit files touched by this commit  2.2.g_1
linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
31 Mar 2004 03:12:58
Original commit files touched by this commit  2.2.g_1
trevor search for other commits by this committer
SIZEify (maintainer timeout)
22 Oct 2003 09:29:55
Original commit files touched by this commit  2.2.g_1
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
07 Mar 2003 05:56:43
Original commit files touched by this commit  2.2.g_1
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
11 Jul 2002 10:52:14
Original commit files touched by this commit  2.2.g_1
wjv search for other commits by this committer
- Add patch that will, for -CURRENT only, change:  -pthread -> -lc_r
- Bump $PORTREVISION

Prompted by:    Various questions from Rune Linding <linding@EMBL-Heidelberg.DE>
22 Aug 2001 14:18:10
files touched by this commit
wjv search for other commits by this committer
- Update port to version 2.2g    
05 Jul 2001 09:58:12
files touched by this commit
wjv search for other commits by this committer
- General clean-up of port.   - Install PDF and HTML documentation.   - Take
over maintainership.    
04 Jul 2001 13:16:13
files touched by this commit
wjv search for other commits by this committer
- Add %%PORTDOCS%% support to pkg-plist.   - $INSTALL_MAN -> $INSTALL_DATA in
Makefile where appropriate.    
08 Oct 2000 00:23:30
files touched by this commit
asami search for other commits by this committer
Convert category biology to new layout.  

Number of commits found: 23

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