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Port details
hmmer 2.3.2 biology on this many watch lists=1 search for ports that depend on this port
Profile hidden Markov models for biological sequence analysis
Maintained by: fernan@iib.unsam.edu.ar search for ports maintained by this maintainer
Port Added: unknown


HMMER is an implementation of profile hidden Markov model methods for
sensitive searches of biological sequence databases using multiple sequence
alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical
model called a "hidden Markov model" which can then be used as a query into
a sequence database to find (and/or align) additional homologues of the
sequence family.

WWW: http://hmmer.wustl.edu/
CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon
Required To Build: lang/perl5.8
Required To Run: lang/perl5.8

To install the port: cd /usr/ports/biology/hmmer/ && make install clean
To add the package: pkg_add -r hmmer


Configuration Options
     No options to configure

Master Sites:
ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/
ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Number of commits found: 12

Commit History - (may be incomplete: see CVSWeb link above for full details)
DateByDescription
22 Jan 2006 08:20:34
Original commit files touched by this commit  2.3.2
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
25 Nov 2004 22:58:29
Original commit files touched by this commit  2.3.2
sem search for other commits by this committer
- Remove a junk white space.
25 Nov 2004 22:35:52
Original commit files touched by this commit  2.3.2
sem search for other commits by this committer
- Update to 2.3.2
- Add WITH_PVM knob
- Pass maintainership to submitter

PR:             ports/74331
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>
20 Nov 2004 08:09:49
Original commit files touched by this commit  2.2.g_1
linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
31 Mar 2004 04:12:58
Original commit files touched by this commit  2.2.g_1
trevor search for other commits by this committer
SIZEify (maintainer timeout)
22 Oct 2003 10:29:55
Original commit files touched by this commit  2.2.g_1
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
07 Mar 2003 05:56:43
Original commit files touched by this commit  2.2.g_1
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
11 Jul 2002 11:52:14
Original commit files touched by this commit  2.2.g_1
wjv search for other commits by this committer
- Add patch that will, for -CURRENT only, change:  -pthread -> -lc_r
- Bump $PORTREVISION

Prompted by:    Various questions from Rune Linding <linding@EMBL-Heidelberg.DE>
22 Aug 2001 15:18:10
files touched by this commit
wjv search for other commits by this committer
- Update port to version 2.2g    
05 Jul 2001 10:58:12
files touched by this commit
wjv search for other commits by this committer
- General clean-up of port.   - Install PDF and HTML documentation.   - Take
over maintainership.    
04 Jul 2001 14:16:13
files touched by this commit
wjv search for other commits by this committer
- Add %%PORTDOCS%% support to pkg-plist.   - $INSTALL_MAN -> $INSTALL_DATA in
Makefile where appropriate.    
08 Oct 2000 01:23:30
files touched by this commit
asami search for other commits by this committer
Convert category biology to new layout.  

Number of commits found: 12

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