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Port details
lagan Efficient tools for large-scale multiple alignments of genomic DNA
2.0_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port

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Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 16 Mar 2006 22:31:50
License: GPLv2
The Lagan Tookit is a set of alignment programs for comparative
genomics. The three main components are a pairwise aligner (LAGAN), a
multiple aligner (M-LAGAN), and a glocal aligner (Shuffle-LAGAN). All
three are based on the CHAOS local alignment tool and combine speed
(regions up to several megabases can be aligned in minutes) with high
accuracy. The results of the alignment can be visualized using the VISTA
visualization tool.

WWW: http://lagan.stanford.edu/
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/lagan/ && make install clean
To add the package: pkg install lagan

PKGNAME: lagan

distinfo:

SHA256 (lagan20.tar.gz) = a65e61ed4fd6608f4e5ad5b11a1b77f4fec1a207d822c5885b3e86727496e1fe
SIZE (lagan20.tar.gz) = 589115


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Runtime dependencies:
  1. perl5>=5.20<5.21 : lang/perl5.20
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
perl5 shebangfix

Master Sites:
  1. http://lagan.stanford.edu/lagan_web/

Number of commits found: 13

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
19 May 2016 11:09:14
Original commit files touched by this commit  2.0_1
Revision:415503
amdmi3 search for other commits by this committer
- Fix trailing whitespace in pkg-messages

Approved by:	portmgr blanket
11 May 2016 21:48:50
Original commit files touched by this commit  2.0_1
Revision:415036
bapt search for other commits by this committer
Prevent collision with getline(3)
While here regen patches
09 Jan 2016 18:26:40
Original commit files touched by this commit  2.0_1
Revision:405652
pawel search for other commits by this committer
Remove deprecated PLIST_DIRSTRY and also no longer needed PLIST_DIRS
11 Jun 2015 10:17:25
Original commit files touched by this commit  2.0_1
Revision:389186
amdmi3 search for other commits by this committer
- Fix shebangs

MFH:		2015Q2
27 Nov 2013 13:16:48
Original commit files touched by this commit  2.0
Revision:335011
jadawin search for other commits by this committer
- Fix build
- Support STAGEDIR

PR:		ports/184238
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
20 Sep 2013 15:55:44
Original commit files touched by this commit  2.0
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
03 Aug 2013 13:44:01
Original commit files touched by this commit  2.0
Revision:324191  Sanity Test Failure
mat search for other commits by this committer
- Convert to new perl framework
- Remove MAKE_JOBS_SAFE=yes, it's the default.
15 Nov 2012 07:04:29
Original commit files touched by this commit  2.0
Revision:307436
wen search for other commits by this committer
- Update to version 2.0
- Update pkg-descr

PR:		172497
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>

Feature safe:	yes
01 Oct 2012 14:45:17
Original commit files touched by this commit  1.2
Revision:305130
tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.2
miwi search for other commits by this committer
- Get Rid MD5 support
08 Nov 2010 15:05:11
Original commit files touched by this commit  1.2
pav search for other commits by this committer
- Unbreak build: CPP is now part of MAKE_ENV

Reported by:    pointyhat
25 Jul 2008 09:08:42
Original commit files touched by this commit  1.2
pav search for other commits by this committer
- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default
MAKE_ENV
16 Mar 2006 22:31:26
Original commit files touched by this commit  1.2
garga search for other commits by this committer
Add lagan 1.2, efficient tools for large-scale multiple alignments of
genomic DNA.

PR:             ports/93058
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>

Number of commits found: 13

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