mafft 5.743 biology =0

Multiple sequence alignments based on fast Fourier transform
Maintained by: fernan@iib.unsam.edu.ar
Port Added: 15 Mar 2006 10:41:45
License: not specified in port

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MAFFT offers a range of multiple alignment strategies, L-INS-i
(accurate; recommended for <200 sequences), FFT-NS-i (standard speed and
accuracy), FFT-NS-2 (fast; recommended for >2,000 sequences), etc.
According to BAliBASE and other benchmark tests, L-INS-i is one of the
most accurate methods currently available.

MAFFT has been described:
K. Katoh, K. Misawa, K. Kuma and T. Miyata (Nucleic Acids Res. 30:
3059-3066, 2002) MAFFT: a novel method for rapid multiple sequence
alignment based on fast Fourier transform. 

WWW: http://align.bmr.kyushu-u.ac.jp/mafft

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Run: biology/fasta3
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/mafft/ && make install clean
To add the package: pkg_add -r mafft

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Configuration Options

     No options to configure

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Master Sites:

http://align.bmr.kyushu-u.ac.jp/mafft/software/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Get Rid MD5 support

- Change depobj for fasta3 to something that does not change on fasta updates

Reported by:    pointyhat
Feature safe:   yes

- Update download locations, update WWW

Reported by:    -fetch-original pointyhat run

- Chase fasta3 update

Reported by:    pointyhat

- Update to 5.743
- Add a MASTER_SITE backup since oficial one just have last version and make
  it fetchable again

Submitted by:   maintainer by email
Reported by:    krismail

Add mafft 5.734, multiple sequence alignments based on fast Fourier
transform.

PR:             ports/93059
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

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