mapm3 3.0 biology =0

Constructs linkage maps of markers segregating in experimental crosses
Maintained by: tphilipp@potion-studios.com
Port Added: 06 Apr 2008 04:49:23
License: not specified in port

MAPMAKER/EXP is a linkage analysis package designed to help construct primary 
linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP 
performs full multipoint linkage analysis (simultaneous estimation of all 
recombination fractions from the primary data) for dominant, recessive, and co-
dominant (e.g.  RFLP-like) markers.  MAPMAKER/EXP is an experimental-cross-only 
successor to the original MAPMAKER program.

MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map 
genes controlling polygenic quantitative traits in F2 intercrosses and BC1 
backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL 
can be found in the technical report (included with MAPMAKER/QTL).  

WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMonThere are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/mapm3/ && make install clean
To add the package: pkg_add -r mapm3

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Configuration Options

     No options to configure

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Master Sites:

http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/

ftp://ftp.ibiblio.org/pub/academic/biology/molbio/mapmaker/

http://iubio.bio.indiana.edu/soft/molbio/qtl/mapmaker/

http://www.mirrorservice.org/sites/iubio.bio.indiana.edu/molbio/qtl/mapmaker/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Get Rid MD5 support

- Mark MAKE_JOBS_UNSAFE

Reported by:    pointyhat

MAPMAKER/EXP is a linkage analysis package designed to help construct primary
linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
performs full multipoint linkage analysis (simultaneous estimation of all
recombination fractions from the primary data) for dominant, recessive, and co-
dominant (e.g.  RFLP-like) markers.  MAPMAKER/EXP is an experimental-cross-only
successor to the original MAPMAKER program.

MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
genes controlling polygenic quantitative traits in F2 intercrosses and BC1
backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
can be found in the technical report (included with MAPMAKER/QTL).

WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/

PR:             ports/122452
Submitted by:   Tassilo Philipp <tphilipp at potion-studios.com>

15 vulnerabilities affecting 34 ports have been reported in the past 14 days

^* - modified, not new

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