molden 4.6_2,1 biology =1

RESTRICTED: free for academic, non profit usage; do not re-distribute source and executable.
Display molecular orbitals and electron densities in 2D and 3D
Maintained by: oivulf@gmail.com
Port Added: unknown
License: not specified in port

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Visualizing the results of molecular orbital calculations
 1) MO program:  gaussian, gamess, mopac, etc.
 2) display molecule in 3D:  geo-opt, single-point, nomal mode (animation)
 3) density:  contour plot or 3D view for electron density and MO coefficient
Everything what you want about MO calculation can be seen.

By the distribution policy of the author;
 * Only the latest version is supplied.
 * Users must get the `distfiles' from the original site.
 * Do not re-distribute the source and the executable.
 * Using a not-so-latest version is prohibited, because 
   the author may only respond about the latest version.

WWW: http://www.cmbi.kun.nl/~schaft/molden/molden.html

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: lang/gcc46, devel/binutils, x11/libX11, x11-toolkits/libXmu
Required To Run: lang/gcc46, x11/libX11, x11-toolkits/libXmu
Required Libraries: graphics/libglut
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/molden/ && make install clean

A package is not available for ports marked as: Forbidden / Broken / Ignore / Restricted

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Configuration Options

     No options to configure

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Master Sites:

ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

The vast majority of pkg-descr files had the following format when they
had both lines:

Author: ...
WWW: ....

So standardize on that, and move them to the end of the file when necessary.

Also fix some more whitespace, and remove more "signature tags" of varying
forms, like -- name, etc.

s/AUTHOR/Author/

A few other various formatting issues

- Get Rid MD5 support

Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr

- Unbreak fetch

Submitted by:   maintainer

- Unbreak distinfo after portrevision bump

Reported by:    pointyhat

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

- Remove conditional checks relevant only on FreeBSD 5.x and older

- Roll back to 4.6 as 4.7 is the development version and is constantly being
  re-rolled.
- Move post-patch target into files/patch-xwin.c to remove sed invocation.
- Respect NOPORTDATA and DATADIR.
- Bring files/patch-aa back (to preserve history) and retire patch-makefile.
- Fixup files/patch-xwin.c so it applies cleanly to this version.

Mark as broken since it has been re-rolled for the 4th(?) time.

Distfile was re-rolled.  The changes were to fix some bugs in the code.
While I'm here, make it respect NOPORTDOCS.

Update to 4.7

PR:             ports/128476
Submitted by:   fulvio ciriaco <oivulf@gmail.com>

Unbreak building for 8-x.

Submitted by:   Steve Kargl <sgk at troutmask.apl.washington.edu> at ports@ ML

- Mark BROKEN on -CURRENT: error: 'linkat' redeclared as different kind of
symbol

Reported by:    pointyhat

- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)

Now we use USE_FORTRAN=yes to use FORTRAN compiler.

- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

- Update to 4.5

- Fix typo

Using only gfortran42. not gcc42.
Bump portrevision.

Migrated to gfortran.

Unbreak: molden has been updated on Aug 17, with the same DISTNAME.

Changelog at <http://www.cmbi.ru.nl/molden/HISTORY>.

BROKEN: Size mismatch.  Since this is unmaintained, deprecate and schedule
for termination on 2006-12-01

NO_CDROM and NO_PACKAGE are not appropriate here

Remove USE_REINPLACE from all categories starting with B

- Update graphics/libglut to 6.4.1.
- Shared lib version and PORTREVISION bumb for all affected ports.

While I'm here:
- Remove USE_MESA knob where it was (35 ports).
  It marked as depricated for 2 years.

PR:             ports/90247
Submitted by:   Ermal Lu?i <eri--@albabsd.org>

- Unbreak by updating to 4.4
- Add dependecy to MESA

PR:             ports/89795
Submitted by:   Johan van Selst <johans@stack.nl>

- BROKEN: Size mismatch

o update to 4.3
o unbreak
o due to no fix for long period, drop maintainership to ports.

This port is scheduled to be removed on 2005-02-18 if it is still
broken at that time, and a fix has not been submitted to GNATS.

BROKEN: Checksum mismatch

Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992

enhancement, build and install the opengl viewer, moldenogl.
update to 3.9, not 3.8, which is newer :)

Committed by maintainer timeout:
> Sat Apr  5 17:46:57 EST 2003 - edwin - informed maintainer

PR:             47177
Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>

De-pkg-comment.

Update to 3.8

Approved by:    rmiya@cc.hirosaki-u.ac.jp (maintainer)

Note distribution term.
Requested by:   maintainer

Back my last commit out.
We couldn't update distinfo without inspecting distfile's changes.
PR:     ports/37476
Suggested by:   kris

distfile has silently changed,
so md5 has to be rewritten.
PR:     ports/37476
Submitted by:   maintainer

o update to 3.7.   differences from the PR:    - this port requires Xlib so add
USE_XLIB.    - remove unnecessary PORTREVISION.    

chase checksum for repacked distfile almost an year ago.   Maintainer does not
have previous distfile.   As the distfile for this port is not distributable, it
is OK to me to change   distinfo now.    

Add NOPORTDOCS support to pkg-plist    

Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now.    

A file was added to distfile and then repackaged with the same name.    

Convert category biology to new layout.  

Update to 3.6.    

Fix this port after the recent PORT{NAME,VERSION} changes.  portlint(1)   while
I'm here.    

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

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