| Port details |
- mothur Software for bioinformatics of the microbial ecology community
- 1.48.0 biology
 =0      1.48.0Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2019-05-20 17:59:35
- Last Update: 2023-09-28 18:56:25
- Commit Hash: db3d647
- License: GPLv3
- WWW:
- https://www.mothur.org/
- Description:
- This project seeks to develop a single piece of open-source, expandable software
to fill the bioinformatics needs of the microbial ecology community.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/mothur/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/mothur
- pkg install mothur
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: mothur
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1652984425
SHA256 (mothur-mothur-v1.48.0_GH0.tar.gz) = 9494406abd8d14b821782ab9db811f045ded9424f28f01234ee6764d4e78941d
SIZE (mothur-mothur-v1.48.0_GH0.tar.gz) = 1652711
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- bash : shells/bash
- gmake>=4.3 : devel/gmake
- Library dependencies:
-
- libreadline.so.8 : devel/readline
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_mothur
- USES:
- compiler:c++11-lang gmake localbase readline
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.48.0
28 Sep 2023 18:56:25
 |
Muhammad Moinur Rahman (bofh) |
biology/mothur: Remove CC/CPP/CXX exports
USES=llvm now by default exports CC/CPP/CXX so remove those
Approved by: portmgr (blanket) |
1.48.0
18 Aug 2023 06:57:12
|
Muhammad Moinur Rahman (bofh) |
biology/mothur: Fix build on 14
Approved by: portmgr (blanket)
Sponsored by: The FreeBSD Foundation |
1.48.0
15 Aug 2023 07:42:10
|
Yuri Victorovich (yuri) |
biology/mothur: Fix build with clang-16
Reported by: fallout |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.48.0
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.48.0
20 May 2022 02:10:18
|
Yuri Victorovich (yuri) |
biology/mothur: Update 1.47.0 -> 1.48.0
Reported by: portscout |
1.47.0
21 Jan 2022 17:14:38
|
Yuri Victorovich (yuri) |
biology/mothur: Update 1.46.1 -> 1.47.0
Reported by: portscout |
1.46.1
02 Sep 2021 09:29:56
|
Yuri Victorovich (yuri) |
biology/mothur: Update 1.46.0 -> 1.46.1
Reported by: portscout |
1.46.0
26 Aug 2021 17:45:39
|
Yuri Victorovich (yuri) |
biology/mothur: Update 1.45.3 -> 1.46.0
Reported by: portscout |
1.45.3
09 May 2021 16:11:11
|
Yuri Victorovich (yuri) |
biology/mothur: Update 1.45.2 -> 1.45.3
Reported by: portscout |
1.45.2
13 Apr 2021 00:29:17
|
Jason W. Bacon (jwb) |
biology/mothur: Update to 1.45.2
Numerous bug fixes and enhancements since 1.43.0
Approved by: yuri |
1.43.0
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
1.43.0
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.43.0
19 Oct 2020 10:30:11
 |
pkubaj |
biology/mothur: fix build on powerpc64le
New PPC hardware usually uses little-endian systems. Let __BIG_ENDIAN__ and
__LITTLE_ENDIAN__ define endianness. |
1.43.0
09 May 2020 19:24:50
|
tijl |
Update devel/gmake to 4.3.
Some changes have been made in this release that break backwards
compatibility. Let USES=gmake force users to upgrade to this version so
port maintainers don't have to support older versions.
PR: 245725
Exp-run by: antoine
Approved by: portmgr (antoine) |
1.43.0
05 Oct 2019 17:04:43
|
yuri |
biology/mothur: Update 1.42.3 -> 1.43.0
Reported by: portscout |
1.42.3_1
26 Jul 2019 20:46:57
|
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330 |
1.42.3
28 Jun 2019 04:02:22
|
yuri |
biology/mothur: Update 1.42.2 -> 1.42.3
Reported by: portscout |
1.42.2
19 Jun 2019 23:54:44
|
yuri |
biology/mothur: Update 1.42.1-3 -> 1.42.2 |
1.42.1.3
20 May 2019 21:20:56
|
yuri |
biology/mothur: Add USES=compiler:c++11-lang |
1.42.1.3
20 May 2019 17:59:18
|
yuri |
New port: biology/mothur: Software for bioinformatics of the microbial ecology
community |
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