mummer 3.23 biology =0

A modular system for rapid whole genome alignment
Maintained by: sylvio@FreeBSD.org
Port Added: 14 Dec 2007 20:56:11
License: not specified in port

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MUMmer is a modular system for the rapid whole genome alignment of finished
or draft sequence. This package provides an efficient suffix tree library,
seed-and-extend alignment, SNP detection, repeat detection, and
visualization tools.

WWW:	http://mummer.sourceforge.net/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: devel/gmake
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/mummer/ && make install clean
To add the package: pkg_add -r mummer

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Configuration Options

     No options to configure

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Master Sites:

http://heanet.dl.sourceforge.net/project/mummer/mummer/3.23/

http://sunet.dl.sourceforge.net/project/mummer/mummer/3.23/

http://iweb.dl.sourceforge.net/project/mummer/mummer/3.23/

http://switch.dl.sourceforge.net/project/mummer/mummer/3.23/

http://surfnet.dl.sourceforge.net/project/mummer/mummer/3.23/

http://kent.dl.sourceforge.net/project/mummer/mummer/3.23/

http://freefr.dl.sourceforge.net/project/mummer/mummer/3.23/

http://voxel.dl.sourceforge.net/project/mummer/mummer/3.23/

http://jaist.dl.sourceforge.net/project/mummer/mummer/3.23/

http://osdn.dl.sourceforge.net/project/mummer/mummer/3.23/

http://nchc.dl.sourceforge.net/project/mummer/mummer/3.23/

http://ncu.dl.sourceforge.net/project/mummer/mummer/3.23/

http://transact.dl.sourceforge.net/project/mummer/mummer/3.23/

http://softlayer.dl.sourceforge.net/project/mummer/mummer/3.23/

http://internode.dl.sourceforge.net/project/mummer/mummer/3.23/

http://ufpr.dl.sourceforge.net/project/mummer/mummer/3.23/

http://waix.dl.sourceforge.net/project/mummer/mummer/3.23/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Update to 3.23

- Get Rid MD5 support

- Update to 3.22

Approved by:    itetcu (mentor)

- Update my mail address to FreeBSD

Approved by:    miwi (mentor)

- Update to 3.21.
- Reset maintainer to submitter.

PR:             ports/138192
Submitted by:   Sylvio Cesar <scjamorim@bsd.com.br>

MUMmer is a modular system for the rapid whole genome alignment of finished
or draft sequence. This package provides an efficient suffix tree library,
seed-and-extend alignment, SNP detection, repeat detection, and
visualization tools.

WWW:    http://mummer.sourceforge.net/

PR:             ports/118142
Submitted by:   Tony Maher

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities