FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

I am looking for an LTO tape library. Do you have one to spare?
non port: head/biology/muscle/Makefile
SVNWeb

Number of commits found: 6

Thu, 13 Mar 2014
[ 07:41 miwi ] Original commit 
348042 biology/garlic/Makefile
348042 biology/mafft/Makefile
348042 biology/mopac/Makefile
348042 biology/mummer/Makefile
348042 biology/muscle/Makefile
348042 biology/paml/Makefile
348042 biology/phylip/Makefile
348042 biology/pymol/Makefile
348042 biology/velvet/Makefile
348042 biology/xmolwt/Makefile
- Convert USE_GMAKE to USES
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Tue, 24 Jul 2012
[ 07:19 cs ] Original commit 
301441 audio/rioutil/Makefile
301441 biology/muscle/Makefile
301441 chinese/gimp-help-zh_CN/Makefile
301441 comms/cwdaemon/Makefile
301441 comms/ebook2cw/Makefile
301441 converters/osm2mp/Makefile
301441 converters/p5-Convert-Bencode/Makefile
301441 converters/p5-String-SetUTF8/Makefile
301441 converters/p5-Unicode-IMAPUtf7/Makefile
301441 converters/p5-Unicode-UTF8simple/Makefile

(Only the first 10 of 30 ports in this commit are shown above. View all ports for this commit)
Fix typos in COMMENT
Sat, 17 May 2008
[ 16:52 pav ] Original commit 
1.2 biology/mrbayes/Makefile
1.3 biology/muscle/Makefile
1.2 biology/njplot/Makefile
- Update maintainer's email address

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)
[ 16:50 pav ] Original commit 
1.2 biology/muscle/Makefile
- Try to fix fetch

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)
Wed, 14 May 2008
[ 13:51 pav ] Original commit 
1.96 biology/Makefile
1.1 biology/muscle/Makefile
1.1 biology/muscle/distinfo
1.1 biology/muscle/files/patch-Makefile
1.1 biology/muscle/files/patch-globalslinux.cpp
1.1 biology/muscle/files/patch-intmath.cpp
1.1 biology/muscle/pkg-descr
MUSCLE is multiple alignment software for protein and nucleotide sequences.
The name stands for multiple sequence comparison by log-expectation.

A range of options is provided that give you the choice of optimizing
accuracy, speed, or some compromise between the two. Default parameters are
those that give the best average accuracy in the published tests. MUSCLE
can achieve both better average accuracy and better speed than CLUSTALW or
T-Coffee, depending on the chosen options.

Citation:

Edgar, R. C. (2004) MUSCLE: multiple sequence alignment with high accuracy
and high throughput. Nucleic Acids Research 32(5): 1792-1797.

Edgar, R. C. (2004) MUSCLE: a multiple sequence alignment method with
reduced time and space complexity. BMC Bioinformatics 5(1): 113.

The NAR paper gives only a brief overview of the algorithm and
implementation details. For a full discussion of the method and many of
the non-default options that it offers, please see the BMC paper.

WWW: http://www.drive5.com/muscle/

PR:             ports/118460
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found: 6

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
dbusJul 03
mencoderJun 28
mplayerJun 28
lzo2Jun 26
phpmyadmin*Jun 24
gnupgJun 23
gnupg1Jun 23
samba36Jun 23
samba4Jun 23
samba41Jun 23
iodineJun 18
asteriskJun 17
asterisk11Jun 17
dbusJun 14
chromiumJun 10

7 vulnerabilities affecting 10 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds


Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24444
Broken 194
Deprecated 619
Ignore 517
Forbidden 2
Restricted 264
No CDROM 102
Vulnerable 26
Expired 4
Set to expire 606
Interactive 15
new 24 hours 4
new 48 hours8
new 7 days32
new fortnight53
new month91

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.