FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

non port: head/biology/muscle/files/patch-globalslinux.cpp
SVNWeb

Number of commits found: 1

Wed, 14 May 2008
[ 13:51 pav ] Original commit 
1.96 biology/Makefile
1.1 biology/muscle/Makefile
1.1 biology/muscle/distinfo
1.1 biology/muscle/files/patch-Makefile
1.1 biology/muscle/files/patch-globalslinux.cpp
1.1 biology/muscle/files/patch-intmath.cpp
1.1 biology/muscle/pkg-descr
MUSCLE is multiple alignment software for protein and nucleotide sequences.
The name stands for multiple sequence comparison by log-expectation.

A range of options is provided that give you the choice of optimizing
accuracy, speed, or some compromise between the two. Default parameters are
those that give the best average accuracy in the published tests. MUSCLE
can achieve both better average accuracy and better speed than CLUSTALW or
T-Coffee, depending on the chosen options.

Citation:

Edgar, R. C. (2004) MUSCLE: multiple sequence alignment with high accuracy
and high throughput. Nucleic Acids Research 32(5): 1792-1797.

Edgar, R. C. (2004) MUSCLE: a multiple sequence alignment method with
reduced time and space complexity. BMC Bioinformatics 5(1): 113.

The NAR paper gives only a brief overview of the algorithm and
implementation details. For a full discussion of the method and many of
the non-default options that it offers, please see the BMC paper.

WWW: http://www.drive5.com/muscle/

PR:             ports/118460
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found: 1

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
chromiumApr 21
drupal8Apr 21
curlApr 20
graphite2*Apr 20
icu*Apr 20
libsamplerateApr 20
libsndfileApr 20
linux-c6-libsndfileApr 20
linux-c6-tiffApr 20
linux-c7-graphite2*Apr 20
linux-c7-libsndfileApr 20
linux-c7-tiffApr 20
tiffApr 20
firefoxApr 19
firefox-esrApr 19

14 vulnerabilities affecting 103 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 29824
Broken 242
Deprecated 205
Ignore 528
Forbidden 0
Restricted 207
No CDROM 84
Vulnerable 138
Expired 23
Set to expire 200
Interactive 0
new 24 hours 5
new 48 hours6
new 7 days169
new fortnight246
new month1554

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.