nab 5.1.2_1 biology =0

DEPRECATED: superseded by AmberTools (by same development group)
A language for macromolecules
Was Maintained by: mldodson@comcast.net
Port Added: 10 Oct 2000 00:57:23

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This is nab (nucleic acid builder), a computer language that
is intended for use in creating, describing and modifying
macromolecules, especially nucleic acids. Programs written in
nab are translated into C, which in turn is compiled into machine
code.

Further general information can be obtained from our web page:

WWW: http://www.scripps.edu/case/

Although we have been using this code for some time now, users
should be aware that bugs may still exist.  Please see the file
COPYING for the usual disclaimer of liability.  Further
enhancements are planned, and will be announced on the web page.

Please send comments and suggestions to Tom Macke
(macke@scripps.edu) and/or to Dave Case (case@scripps.edu).  If
you find the program useful, please send us a note outlining your
applications.

This port to FreeBSD by M. L. Dodson, Active Site Dynamics
mldodson@houston.rr.com

CVSWeb : Main Web Site : Distfiles Availability : PortsMon

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Required To Build: devel/ucpp
Required To Run: devel/ucpp

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No installation instructions: this port has been deleted.

The package name of this deleted port was: nab

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Configuration Options

     No options to configure

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Master Sites:

http://www.activesitedynamics.com/mldodson/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Delete biology/nab port after being marked DEPRECATED for three months

PR:             ports/125891
Submitted by:   M. L. Dodson <mldodson@comcast.net> (maintainer)

- Update maintainer's email
- Mark as deprecated

PR:             ports/122474
Submitted by:   M. L. Dodson <mldodson at comcast.net> (maintainer with another
email)

- Allow build with AMD64
- Fix pkg-plist
- Bump PORTREVISION

PR:             117435
Submitted by:   "M. L. Dodson" <mldodson@comcast.net> (maintainer)

- Update to 5.1.2
- Update maintainer mail adresse

PR:             ports/107118
Submitted by:   M. L. Dodson <bdodson@houston.rr.com> (maintainer)

SHA256ify

Approved by:    krion@

- Fix the packing list [1]
- Add a run dependency on ucpp
- Correct the NABHOME used in pre-install

PR:             ports/80457
Submitted by:   maintainer
Reported by:    pointyhat [1]

- Update to 5.0
- Cleanups

PR:             ports/80372
Submitted by:   maintainer

Minor cleanup.

PR:             ports/72094
Submitted by:   M. L. Dodson <bdodson at scms dot utmb dot edu>  (maintainer)

Now installs on FreeBSD 5.x.

Update config.h and unbreak.

PR:             ports/71505
Submitted by:   maintainer
Approved by:    portmgr (marcus).

BROKEN on 5.x: Does not compile

Approved by:    portmgr (self)

Update to 4.6

PR:             ports/68561
Submitted by:   maintainer

- update to 4.5.3
- remove version from pkg-descr

PR:             65972
Submitted by:   maintainer

Add size data.

Approved by:    maintainers

${MASTER_SITES} are slow.  This patch adds a mirror site to help
fetch work more frequently.  This patch patches the Makefile from
PORTSDIR}/biology

PR:             58130
Submitted by:   MAINTAINER

Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992

update biology/nab: 4.5.1 -> 4.5.2

PR:             57970
Submitted by:   M. L. Dodson <bdodson@scms.utmb.edu> (maintainer)

BROKEN: Does not fetch

update biology/nab: 4.4 -> 4.5.1

PR:             52786
Submitted by:   M. L. Dodson <bdodson@scms.utmb.EDU> (maintainer)

De-pkg-comment.

PERL -> REINPLACE
Noticed on: bento

Add another entry for MASTER_SITES and unbreak with latest version of bison

PR:             ports/44711
Submitted by:   maintainer

upgrade to 4.4

PR:             40612
Submitted by:   maintainer

Remove #include <malloc.h>

Style police: WWW tags should either end in a file/script or TRAILING /; Fix the
later case    

Remove a patch turd from the pkg-plist    

This port require bison to build so add USE_BISON.    

Use proper POSIX syntax for `chown'.    

upgrade to 4.3.2    

Initiail version of nab (4.2)    

9 vulnerabilities affecting 12 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities