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Port details
nab 5.1.2_1 biology Deleted on this many watch lists=0 search for ports that depend on this port
Deprecated DEPRECATED: superseded by AmberTools (by same development group)
A language for macromolecules
Was Maintained by: mldodson@comcast.net search for ports maintained by this maintainer
Port Added: 09 Oct 2000 23:57:23
License: not specified in port


This is nab (nucleic acid builder), a computer language that
is intended for use in creating, describing and modifying
macromolecules, especially nucleic acids. Programs written in
nab are translated into C, which in turn is compiled into machine
code.

Further general information can be obtained from our web page:

WWW: http://www.scripps.edu/case/

Although we have been using this code for some time now, users
should be aware that bugs may still exist.  Please see the file
COPYING for the usual disclaimer of liability.  Further
enhancements are planned, and will be announced on the web page.

Please send comments and suggestions to Tom Macke
(macke@scripps.edu) and/or to Dave Case (case@scripps.edu).  If
you find the program useful, please send us a note outlining your
applications.

This port to FreeBSD by M. L. Dodson, Active Site Dynamics
mldodson@houston.rr.com
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Required To Build:
  1. devel/ucpp
Required To Run:
  1. devel/ucpp
There are no ports dependent upon this port

No installation instructions: this port has been deleted.

The package name of this deleted port was: nab


Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. http://www.activesitedynamics.com/mldodson/

Number of commits found: 30

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
24 Jul 2008 12:17:12
Original commit files touched by this commit  5.1.2_1
pav search for other commits by this committer
- Delete biology/nab port after being marked DEPRECATED for three months

PR:             ports/125891
Submitted by:   M. L. Dodson <mldodson@comcast.net> (maintainer)
06 Apr 2008 08:39:20
Original commit files touched by this commit  5.1.2_1
rafan search for other commits by this committer
- Update maintainer's email
- Mark as deprecated

PR:             ports/122474
Submitted by:   M. L. Dodson <mldodson at comcast.net> (maintainer with another
email)
28 Oct 2007 21:42:23
Original commit files touched by this commit  5.1.2_1
miwi search for other commits by this committer
- Allow build with AMD64
- Fix pkg-plist
- Bump PORTREVISION

PR:             117435
Submitted by:   "M. L. Dodson" <mldodson@comcast.net> (maintainer)
23 Dec 2006 21:45:17
Original commit files touched by this commit  5.1.2
miwi search for other commits by this committer
- Update to 5.1.2
- Update maintainer mail adresse

PR:             ports/107118
Submitted by:   M. L. Dodson <bdodson@houston.rr.com> (maintainer)
22 Jan 2006 08:20:34
Original commit files touched by this commit  5.0_1
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
29 Apr 2005 22:14:30
Original commit files touched by this commit  5.0_1
jylefort search for other commits by this committer
- Fix the packing list [1]
- Add a run dependency on ucpp
- Correct the NABHOME used in pre-install

PR:             ports/80457
Submitted by:   maintainer
Reported by:    pointyhat [1]
28 Apr 2005 19:01:41
Original commit files touched by this commit  5.0
jylefort search for other commits by this committer
- Update to 5.0
- Cleanups

PR:             ports/80372
Submitted by:   maintainer
23 Nov 2004 09:13:14
Original commit files touched by this commit  4.6
linimon search for other commits by this committer
Minor cleanup.

PR:             ports/72094
Submitted by:   M. L. Dodson <bdodson at scms dot utmb dot edu>  (maintainer)
28 Oct 2004 21:01:05
Original commit files touched by this commit  4.6
kris search for other commits by this committer
Now installs on FreeBSD 5.x.
24 Sep 2004 05:22:57
Original commit files touched by this commit  4.6
thierry search for other commits by this committer
Update config.h and unbreak.

PR:             ports/71505
Submitted by:   maintainer
Approved by:    portmgr (marcus).
19 Sep 2004 01:28:23
Original commit files touched by this commit  4.6
kris search for other commits by this committer
BROKEN on 5.x: Does not compile

Approved by:    portmgr (self)
02 Jul 2004 09:53:25
Original commit files touched by this commit  4.6
vs search for other commits by this committer
Update to 4.6

PR:             ports/68561
Submitted by:   maintainer
02 May 2004 03:28:49
Original commit files touched by this commit  4.5.3
petef search for other commits by this committer
- update to 4.5.3
- remove version from pkg-descr

PR:             65972
Submitted by:   maintainer
18 Mar 2004 02:52:47
Original commit files touched by this commit  4.5.2
trevor search for other commits by this committer
Add size data.

Approved by:    maintainers
06 Nov 2003 11:32:30
Original commit files touched by this commit  4.5.2
jeh search for other commits by this committer
${MASTER_SITES} are slow.  This patch adds a mirror site to help
fetch work more frequently.  This patch patches the Makefile from
PORTSDIR}/biology

PR:             58130
Submitted by:   MAINTAINER
22 Oct 2003 09:29:55
Original commit files touched by this commit  4.5.2
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
14 Oct 2003 12:18:51
Original commit files touched by this commit  4.5.2
daichi search for other commits by this committer
update biology/nab: 4.5.1 -> 4.5.2

PR:             57970
Submitted by:   M. L. Dodson <bdodson@scms.utmb.edu> (maintainer)
12 Oct 2003 22:31:49
Original commit files touched by this commit  4.5.1
kris search for other commits by this committer
BROKEN: Does not fetch
08 Jul 2003 11:50:36
Original commit files touched by this commit  4.5.1
daichi search for other commits by this committer
update biology/nab: 4.4 -> 4.5.1

PR:             52786
Submitted by:   M. L. Dodson <bdodson@scms.utmb.EDU> (maintainer)
21 Feb 2003 11:01:38
Original commit files touched by this commit  4.4
knu search for other commits by this committer
De-pkg-comment.
04 Nov 2002 01:55:06
Original commit files touched by this commit  4.4
edwin search for other commits by this committer
PERL -> REINPLACE
Noticed on: bento
29 Oct 2002 22:27:17
Original commit files touched by this commit  4.4
pat search for other commits by this committer
Add another entry for MASTER_SITES and unbreak with latest version of bison

PR:             ports/44711
Submitted by:   maintainer
16 Jul 2002 06:18:16
Original commit files touched by this commit  4.4
ijliao search for other commits by this committer
upgrade to 4.4

PR:             40612
Submitted by:   maintainer
31 Mar 2002 03:55:29
Original commit files touched by this commit  4.3.2
kris search for other commits by this committer
Remove #include <malloc.h>
20 Nov 2001 23:49:34
files touched by this commit
lioux search for other commits by this committer
Style police: WWW tags should either end in a file/script or TRAILING /; Fix the
later case    
20 Aug 2001 07:47:56
files touched by this commit
kris search for other commits by this committer
Remove a patch turd from the pkg-plist    
25 Jul 2001 18:57:49
files touched by this commit
steve search for other commits by this committer
This port require bison to build so add USE_BISON.    
01 Jun 2001 07:05:18
files touched by this commit
obrien search for other commits by this committer
Use proper POSIX syntax for `chown'.    
27 May 2001 14:49:54
files touched by this commit
ijliao search for other commits by this committer
upgrade to 4.3.2    
10 Oct 2000 03:57:23
files touched by this commit
jeh search for other commits by this committer
Initiail version of nab (4.2)    

Number of commits found: 30

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