njplot 2.1 biology =0

Phylogenetic tree drawing program capable of interactive manipulation
Maintained by: mzaki@m.u-tokyo.ac.jp
Port Added: 14 May 2008 15:07:25

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NJplot is a tree drawing program able to draw any phylogenetic tree expressed
in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP
package). NJplot is especially convenient for rooting the unrooted trees
obtained from parsimony, distance or maximum likelihood tree-building methods.

The package contains the following programs:
njplot      - draw phylogenetic trees and interactively modify them
newicktops  - non-interactive version rendering into a PostScript file
newicktotxt - non-interactive version rendering into a text file
unrooted    - draw unrooted circular trees

If you use NJplot in a published work, please cite the following reference:

Perriere, G. and Gouy, M. (1996) WWW-Query: An on-line retrieval system for
biological sequence banks. Biochimie, 78, 364-369.

WWW: http://pbil.univ-lyon1.fr/software/njplot.html

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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Required To Build: biology/ncbi-toolkit, x11/libXpm, x11/xorg-libraries
Required To Run: x11/libXpm, x11/xorg-libraries
Required Libraries: x11-toolkits/open-motif

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To install the port: cd /usr/ports/biology/njplot/ && make install clean
To add the package: pkg_add -r njplot

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Configuration Options

     No options to configure

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Master Sites:

ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/njplot/archive/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Update maintainer's email address

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)

NJplot is a tree drawing program able to draw any phylogenetic tree expressed
in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP
package). NJplot is especially convenient for rooting the unrooted trees
obtained from parsimony, distance or maximum likelihood tree-building methods.

The package contains the following programs:
njplot      - draw phylogenetic trees and interactively modify them
newicktops  - non-interactive version rendering into a PostScript file
newicktotxt - non-interactive version rendering into a text file
unrooted    - draw unrooted circular trees

If you use NJplot in a published work, please cite the following reference:

Perriere, G. and Gouy, M. (1996) WWW-Query: An on-line retrieval system for
biological sequence banks. Biochimie, 78, 364-369.

WWW: http://pbil.univ-lyon1.fr/software/njplot.html

PR:             ports/118438
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

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