njplot 2.1_2 biology =1

Phylogenetic tree drawing program capable of interactive manipulation
Maintained by: mzaki@m.u-tokyo.ac.jp
Port Added: 14 May 2008 14:07:25
License: not specified in port

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NJplot is a tree drawing program able to draw any phylogenetic tree expressed
in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP
package). NJplot is especially convenient for rooting the unrooted trees
obtained from parsimony, distance or maximum likelihood tree-building methods.

The package contains the following programs:
njplot      - draw phylogenetic trees and interactively modify them
newicktops  - non-interactive version rendering into a PostScript file
newicktotxt - non-interactive version rendering into a text file
unrooted    - draw unrooted circular trees

If you use NJplot in a published work, please cite the following reference:

Perriere, G. and Gouy, M. (1996) WWW-Query: An on-line retrieval system for
biological sequence banks. Biochimie, 78, 364-369.

WWW: http://pbil.univ-lyon1.fr/software/njplot.html

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: biology/ncbi-toolkit, x11/libX11, x11-toolkits/libXt, x11-toolkits/libXmu, x11/libXp, x11/libXpm
Required To Run: x11/libX11, x11-toolkits/libXt, x11-toolkits/libXmu, x11/libXp, x11/libXpm
Required Libraries: x11-toolkits/open-motif
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/njplot/ && make install clean
To add the package: pkg_add -r njplot

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Configuration Options

     No options to configure

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Master Sites:

ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/njplot/archive/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Bump PORTREVISION after open-mofit update

- Get Rid MD5 support

Convert most of remaining ports that depend on xorg-libraries to
modular xorg.

- supply corresponding USE_XORG for all imake-using ports that need it
- USE_IMAKE no longer implies USE_XLIB in absence of USE_XORG
- retire USE_X_PREFIX which is not really used anywhere after the
  above change
- a few minor nits like whitespace and SF macro

Tested by:      2 tinderbox runs by pav
Approved by:    portmgr (pav)

- Update maintainer's email address

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)

NJplot is a tree drawing program able to draw any phylogenetic tree expressed
in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP
package). NJplot is especially convenient for rooting the unrooted trees
obtained from parsimony, distance or maximum likelihood tree-building methods.

The package contains the following programs:
njplot      - draw phylogenetic trees and interactively modify them
newicktops  - non-interactive version rendering into a PostScript file
newicktotxt - non-interactive version rendering into a text file
unrooted    - draw unrooted circular trees

If you use NJplot in a published work, please cite the following reference:

Perriere, G. and Gouy, M. (1996) WWW-Query: An on-line retrieval system for
biological sequence banks. Biochimie, 78, 364-369.

WWW: http://pbil.univ-lyon1.fr/software/njplot.html

PR:             ports/118438
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

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