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non port: head/biology/njplot/Makefile
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Number of commits found: 13

Sun, 25 Oct 2015
[ 19:35 antoine ] Original commit 
400160 archivers/hlextract/Makefile
400160 archivers/wzip/Makefile
400160 astro/aa/Makefile
400160 astro/dgpsip/Makefile
400160 astro/ephem/Makefile
400160 astro/sky2000/Makefile
400160 astro/wmglobe/Makefile
400160 audio/ampache/Makefile
400160 audio/amrcoder/Makefile
400160 audio/btc/Makefile

(Only the first 10 of 95 ports in this commit are shown above. View all ports for this commit)
Deprecate ports broken for more than 6 months
Sun, 5 Apr 2015
[ 17:55 bapt ] Original commit 
383309 biology/consed/Makefile
383309 biology/migrate/Makefile
383309 biology/ncbi-blast+/Makefile
383309 biology/njplot/Makefile
383309 biology/ortep3/Makefile
383309 biology/p5-Bio-ASN1-EntrezGene/Makefile
383309 biology/paml/Makefile
383309 biology/platon/Makefile
383309 biology/povchem/Makefile
383309 biology/seaview/Makefile
Mark as broken unfetchable ports
Sun, 1 Jun 2014
[ 11:26 ohauer ] Original commit 
356098 biology/njplot/Makefile
- add stage support
- add OPTION for X11
- bump PORTREVISION
Fri, 21 Feb 2014
[ 13:35 ehaupt ] Original commit 
345397 biology/biojava/Makefile
345397 biology/consed/Makefile
345397 biology/finchtv/Makefile
345397 biology/genpak/Makefile
345397 biology/mummer/Makefile
345397 biology/njplot/Makefile
345397 biology/p5-bioperl-run/Makefile
345397 biology/p5-bioperl/Makefile
345397 biology/paml/Makefile
345397 biology/velvet/Makefile
Remove trailing whitespaces from category biology
Mon, 10 Feb 2014
[ 13:54 ehaupt ] Original commit 
343634 archivers/aolserver-nszlib/Makefile
343634 archivers/dact/Makefile
343634 archivers/freeze/Makefile
343634 archivers/javatar/Makefile
343634 archivers/lha-ac/Makefile
343634 archivers/libpar2/Makefile
343634 archivers/lzo2/Makefile
343634 archivers/makeself/Makefile
343634 archivers/py-lzma/Makefile
343634 archivers/ruby-libarchive/Makefile

(Only the first 10 of 581 ports in this commit are shown above. View all ports for this commit)
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
Fri, 3 Jan 2014
[ 15:46 adamw ] Original commit 
338550 biology/biojava/Makefile
338550 biology/blast/Makefile
338550 biology/consed/Makefile
338550 biology/finchtv/Makefile
338550 biology/mafft/Makefile
338550 biology/mummer/Makefile
338550 biology/njplot/Makefile
338550 biology/p5-bioperl-run/Makefile
338550 biology/p5-bioperl/Makefile
338550 biology/paml/Makefile

(Only the first 10 of 14 ports in this commit are shown above. View all ports for this commit)
Convert biology to MDOCS and MEXAMPLES
Sun, 22 Sep 2013
[ 18:05 bapt ] Original commit 
327888 biology/njplot/Makefile
327888 converters/p5-Convert-UUlib/Makefile
327888 databases/ocaml-mysql/Makefile
327888 databases/p5-Class-DBI-Pg/Makefile
327888 databases/p5-Class-DBI-SQLite/Makefile
327888 databases/p5-DBIx-DBSchema/Makefile
327888 databases/pecl-drizzle/Makefile
327888 databases/puredb/Makefile
327888 deskutils/rolo/Makefile
327888 devel/bicyclerepair/Makefile

(Only the first 10 of 132 ports in this commit are shown above. View all ports for this commit)
Fix NO_STAGE attribution
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Wed, 10 Jul 2013
[ 07:33 bapt ] Original commit 
322624 biology/njplot/Makefile
Convert from USE_MOTIF to USES=motif
Mon, 2 May 2011
[ 12:44 makc ] Original commit 
1.7 arabic/arabtex/Makefile
1.8 astro/pp3/Makefile
1.10 astro/xmoontool/Makefile
1.8 audio/dekagen/Makefile
1.11 audio/fdmf/Makefile
1.35 audio/rosegarden/Makefile
1.14 audio/xanalyser/Makefile
1.67 audio/xmcd/Makefile
1.24 audio/xmmix/Makefile
1.27 audio/xmradio/Makefile

(Only the first 10 of 195 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION after open-mofit update
Tue, 9 Jun 2009
[ 15:33 amdmi3 ] Original commit 
1.622 Mk/bsd.port.mk
1.24 astro/xphoon/Makefile
1.16 audio/libworkman/Makefile
1.54 audio/timidity++/Makefile
1.30 audio/workman/Makefile
1.23 audio/wsoundprefs/Makefile
1.63 audio/xmcd/Makefile
1.19 audio/xmix/Makefile
1.23 audio/xmmix/Makefile
1.18 benchmarks/xengine/Makefile

(Only the first 10 of 240 ports in this commit are shown above. View all ports for this commit)
Convert most of remaining ports that depend on xorg-libraries to
modular xorg.

- supply corresponding USE_XORG for all imake-using ports that need it
- USE_IMAKE no longer implies USE_XLIB in absence of USE_XORG
- retire USE_X_PREFIX which is not really used anywhere after the
  above change
- a few minor nits like whitespace and SF macro

Tested by:      2 tinderbox runs by pav
Approved by:    portmgr (pav)
Sat, 17 May 2008
[ 16:52 pav ] Original commit 
1.2 biology/mrbayes/Makefile
1.3 biology/muscle/Makefile
1.2 biology/njplot/Makefile
- Update maintainer's email address

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)
Wed, 14 May 2008
[ 14:07 pav ] Original commit 
1.97 biology/Makefile
1.1 biology/njplot/Makefile
1.1 biology/njplot/distinfo
1.1 biology/njplot/files/patch-makefile
1.1 biology/njplot/pkg-descr
NJplot is a tree drawing program able to draw any phylogenetic tree expressed
in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP
package). NJplot is especially convenient for rooting the unrooted trees
obtained from parsimony, distance or maximum likelihood tree-building methods.

The package contains the following programs:
njplot      - draw phylogenetic trees and interactively modify them
newicktops  - non-interactive version rendering into a PostScript file
newicktotxt - non-interactive version rendering into a text file
unrooted    - draw unrooted circular trees

If you use NJplot in a published work, please cite the following reference:

Perriere, G. and Gouy, M. (1996) WWW-Query: An on-line retrieval system for
biological sequence banks. Biochimie, 78, 364-369.

WWW: http://pbil.univ-lyon1.fr/software/njplot.html

PR:             ports/118438
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found: 13

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