p5-Bio-ASN1-EntrezGene 1.091 biology =1

Regular expression-based Perl Parser for NCBI Entrez Gene
Maintained by: mauricio@arareko.net
Port Added: 15 Oct 2005 21:11:03
Also Listed In: perl5

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Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI Entrez
Gene genome databases (http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene). It
parses an ASN.1-formatted Entrez Gene record and returns a data structure that
contains all data items from the gene record.

The parser will report error & line number if input data does not conform to the
NCBI Entrez Gene genome annotation file format.

WWW: http://search.cpan.org/dist/Bio-ASN1-EntrezGene/

- Mauricio
mauricio@arareko.net

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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Required To Build: lang/perl5.8
Required To Run: lang/perl5.8

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To install the port: cd /usr/ports/biology/p5-Bio-ASN1-EntrezGene/ && make install clean
To add the package: pkg_add -r p5-Bio-ASN1-EntrezGene

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Configuration Options

     No options to configure

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Master Sites:

ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/

ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/

http://www.cpan.dk/modules/by-module/Bio/

http://ring.nict.go.jp/archives/lang/perl/CPAN/modules/by-module/Bio/

http://ring.sakura.ad.jp/archives/lang/perl/CPAN/modules/by-module/Bio/

http://ring.riken.jp/archives/lang/perl/CPAN/modules/by-module/Bio/

ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/

ftp://ftp.dti.ad.jp/pub/lang/CPAN/modules/by-module/Bio/

ftp://ftp.sunet.se/pub/lang/perl/CPAN/modules/by-module/Bio/

ftp://mirror.hiwaay.net/CPAN/modules/by-module/Bio/

ftp://ftp.mirrorservice.org/sites/ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/

ftp://csociety-ftp.ecn.purdue.edu/pub/CPAN/modules/by-module/Bio/

ftp://ftp.isu.net.sa/pub/CPAN/modules/by-module/Bio/

ftp://ftp.cs.colorado.edu/pub/perl/CPAN/modules/by-module/Bio/

ftp://cpan.pop-mg.com.br/pub/CPAN/modules/by-module/Bio/

http://at.cpan.org/modules/by-module/Bio/

ftp://ftp.chg.ru/pub/lang/perl/CPAN/modules/by-module/Bio/

ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/

http://backpan.cpan.org/modules/by-module/Bio/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)

Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr

SHA256ify

Approved by:    krion@

Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)

Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser for
NCBI Entrez Gene.

PR:             87423
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
Approved by:    novel (mentor) (implicit)

10 vulnerabilities affecting 29 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities