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Port details
p5-Bio-ASN1-EntrezGene Regular expression-based Perl Parser for NCBI Entrez Gene
1.70_1,1 biology on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 15 Oct 2005 20:11:03
Also Listed In: perl5
License: not specified in port
Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI
Entrez Gene genome databases [1]. It parses an ASN.1-formatted Entrez Gene
record and returns a data structure that contains all data items from the
gene record.

[1] http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene

The parser will report error & line number if input data does not conform
to the NCBI Entrez Gene genome annotation file format.
 
WWW: http://search.cpan.org/dist/Bio-ASN1-EntrezGene/
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. p5-bioperl>=0 : biology/p5-bioperl
  2. perl5.20.2 : lang/perl5.20
Runtime dependencies:
  1. p5-bioperl>=0 : biology/p5-bioperl
  2. perl5.20.2 : lang/perl5.20
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/p5-Bio-ASN1-EntrezGene/ && make install clean
To add the package: pkg install biology/p5-Bio-ASN1-EntrezGene


Configuration Options
     No options to configure

USES:
perl5

Master Sites:
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. ftp://ftp.sunet.se/pub/lang/perl/CPAN/modules/by-module/Bio/
  8. http://backpan.perl.org/modules/by-module/Bio/
  9. http://cpan.metacpan.org/modules/by-module/Bio/
  10. http://distcache.FreeBSD.org/ports-distfiles/
  11. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  12. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  13. http://www.cpan.dk/modules/by-module/Bio/
  14. http://www.cpan.dk/modules/by-module/Bio/
  15. http://www.cpan.org/modules/by-module/Bio/

Number of commits found: 18

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
24 Jun 2015 15:16:24
Original commit files touched by this commit  1.70_1,1
Revision:390487
adamw search for other commits by this committer
Start removing MASTER_SITE_SUBDIR=CPAN:username where possible. The
downside to having this set is that portscout cannot find new releases
when the username changes (which happens often in large projects with
multiple maintainers).
08 May 2015 18:12:37
Original commit files touched by this commit  1.70_1,1
Revision:385811
adamw search for other commits by this committer
Reassign biology/ perl modules to perl@.

While here:

Regenerate p5-AcePerl's patches using makepatch.
Make p5-Bio-ASN1-EntrezGene depend on p5-bioperl, instead of the
other way around. Bump PORTREVISION on those two ports.
11 Apr 2015 15:19:04
Original commit files touched by this commit  1.70,1
Revision:383807
marino search for other commits by this committer
biology/p5-Bio-ASN1-EntrezGene: bump PORTEPOCH

Apparently in some world I don't live in 1.091 > 1.70
pkg needs this port's epoch to be bumped

reported by: 	wen
11 Apr 2015 15:00:13
Original commit files touched by this commit  1.70
Revision:383805
marino search for other commits by this committer
biology/p5-Bio-ASN1-EntrezGene: Upgrade 1.09 => 1.70 to unbreak

While here, reset the port.  The last time the maintainer was seen was
in 2005, when the port was created.  Also, rewrap the package description
such that it keeps within 75 characters; also move the url so it won't
wrap across lines.
05 Apr 2015 17:55:36
Original commit files touched by this commit  1.091_1
Revision:383309
bapt search for other commits by this committer
Mark as broken unfetchable ports
26 Nov 2014 13:08:38
Original commit files touched by this commit  1.091_1
Revision:373448
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Oct 2014 07:10:48
Original commit files touched by this commit  1.091
Revision:371237
bapt search for other commits by this committer
Cleanup plist
29 Jul 2014 19:11:53
Original commit files touched by this commit  1.091
Revision:363374
adamw search for other commits by this committer
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...

Approved by:	portmgr (not really, but touches unstaged ports)
06 Jan 2014 09:57:19
Original commit files touched by this commit  1.091
Revision:338853
az search for other commits by this committer
- add stage support

Approved by:	portmgr (blanket infrastructure)
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.091
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
07 Sep 2013 07:44:27
Original commit files touched by this commit  1.091
Revision:326575
az search for other commits by this committer
- convert to the new perl5 framework

Approved by:	portmgr (bapt@, blanket)
22 Oct 2011 23:50:23
Original commit files touched by this commit  1.091
eadler search for other commits by this committer
- remove maintainer tags from pkg-descr

Approved by:    portmgr
Approved by:    bapt (mentor)
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.091
miwi search for other commits by this committer
- Get Rid MD5 support
17 Apr 2008 14:30:31
Original commit files touched by this commit  1.091
araujo search for other commits by this committer
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)
08 Sep 2007 00:53:15
Original commit files touched by this commit  1.091
linimon search for other commits by this committer
Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr
22 Jan 2006 08:20:34
Original commit files touched by this commit  1.091
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
22 Jan 2006 01:25:24
Original commit files touched by this commit  1.091
edwin search for other commits by this committer
Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)
15 Oct 2005 20:09:50
Original commit files touched by this commit  1.091
ehaupt search for other commits by this committer
Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser for
NCBI Entrez Gene.

PR:             87423
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
Approved by:    novel (mentor) (implicit)

Number of commits found: 18

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