p5-Bio-Das 1.09 biology =0

Client-side library for Distributed Genome Annotation System
Maintained by: perl@FreeBSD.org
Port Added: 01 Sep 2005 14:10:39
Also Listed In: perl5

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Bio::Das provides access to genome sequencing and annotation databases
that export their data in Distributed Annotation System (DAS) format
version 1.5.  This system is described at http://biodas.org.  Both
unencrypted (http:) and SSL-encrypted (https:) DAS servers are sup-
ported.  (To run SSL, you will need IO::Socket::SSL and Net::SSLeay
installed).

WWW: http://www.biodas.org

-- Razi Khaja <razi@genet.sickkids.on.ca>

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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Required To Build: archivers/p5-Compress-Zlib, www/p5-HTML-Parser, www/p5-libwww, converters/p5-MIME-Base64, biology/p5-bioperl, lang/perl5.8
Required To Run: archivers/p5-Compress-Zlib, www/p5-HTML-Parser, www/p5-libwww, converters/p5-MIME-Base64, biology/p5-bioperl, lang/perl5.8, lang/perl5.8

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To install the port: cd /usr/ports/biology/p5-Bio-Das/ && make install clean
To add the package: pkg_add -r p5-Bio-Das

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Configuration Options

     No options to configure

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Master Sites:

http://www.biodas.org/download/Bio::Das/

ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/

ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/

http://www.cpan.dk/modules/by-module/Bio/

http://ring.nict.go.jp/archives/lang/perl/CPAN/modules/by-module/Bio/

http://ring.sakura.ad.jp/archives/lang/perl/CPAN/modules/by-module/Bio/

http://ring.riken.jp/archives/lang/perl/CPAN/modules/by-module/Bio/

ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/

ftp://ftp.dti.ad.jp/pub/lang/CPAN/modules/by-module/Bio/

ftp://ftp.sunet.se/pub/lang/perl/CPAN/modules/by-module/Bio/

ftp://mirror.hiwaay.net/CPAN/modules/by-module/Bio/

ftp://ftp.mirrorservice.org/sites/ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/

ftp://csociety-ftp.ecn.purdue.edu/pub/CPAN/modules/by-module/Bio/

ftp://ftp.isu.net.sa/pub/CPAN/modules/by-module/Bio/

ftp://ftp.cs.colorado.edu/pub/perl/CPAN/modules/by-module/Bio/

ftp://cpan.pop-mg.com.br/pub/CPAN/modules/by-module/Bio/

http://at.cpan.org/modules/by-module/Bio/

ftp://ftp.chg.ru/pub/lang/perl/CPAN/modules/by-module/Bio/

ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/

http://backpan.cpan.org/modules/by-module/Bio/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Update to 1.09

Update to 1.08

- Include some ports in perl5 category.

PR:             ports/123530
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    flz (portmgr)

- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)

- Update to 1.07

- Update to 1.06
- Remove 4.X cruft

- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response to
email.

Hat:            portmgr

- Update to 1.03

PR:             ports/106300
Submitted by:   chinsan
Approved by:    maintainer timeout (15 days)

Correct path to Compress::Zlib.pm after recent p5-Compress-Zlib update.

SHA256ify

Approved by:    krion@

- Remove symlinks that belong to mtree

Approved by:    maintainers

Add the right MASTER_SITE_SUBDIR, so that this port is fetchable from
 20 sites instead of just 1.

Add p5-Bio-Das 1.02, client-side library for Distributed Genome
Annotation System.

PR:             ports/76379
Submitted by:   Razi Khaja <razi@genet.sickkids.on.ca>

9 vulnerabilities affecting 12 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities