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Port details
p5-Bio-Das 1.17_2 biology on this many watch lists=0 search for ports that depend on this port
Client-side library for Distributed Genome Annotation System
Maintained by: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 01 Sep 2005 13:10:39
Also Listed In: perl5
License: not specified in port


Bio::Das provides access to genome sequencing and annotation databases
that export their data in Distributed Annotation System (DAS) format
version 1.5.  This system is described at http://biodas.org.  Both
unencrypted (http:) and SSL-encrypted (https:) DAS servers are sup-
ported.  (To run SSL, you will need IO::Socket::SSL and Net::SSLeay
installed).

WWW: http://search.cpan.org/dist/Bio-Das/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.

Required To Build:
  1. www/p5-HTML-Parser
  2. biology/p5-bioperl
  3. www/p5-libwww
  4. lang/perl5.16
Required To Run:
  1. www/p5-HTML-Parser
  2. biology/p5-bioperl
  3. www/p5-libwww
  4. lang/perl5.16
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/p5-Bio-Das/ && make install clean
To add the package: pkg install biology/p5-Bio-Das


Configuration Options
     No options to configure

Master Sites:
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  5. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  7. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  8. ftp://ftp.sunet.se/pub/lang/perl/CPAN/modules/by-module/Bio/
  9. http://at.cpan.org/modules/by-module/Bio/
  10. http://backpan.perl.org/modules/by-module/Bio/
  11. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  12. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  13. http://www.cpan.dk/modules/by-module/Bio/
  14. http://www.cpan.dk/modules/by-module/Bio/

Number of commits found: 36

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
05 Jan 2014 12:07:21
Original commit files touched by this commit  1.17_2
Revision:338751
az search for other commits by this committer
- support stage
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.17_2
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
02 Aug 2013 18:52:11
Original commit files touched by this commit  1.17_2
Revision:324174
mat search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default.
17 Dec 2012 15:39:36
Original commit files touched by this commit  1.17_2
Revision:309105
az search for other commits by this committer
Cleanup supporting perl version 5.8 and 5.10,
lang/perl5.8 and lang/5.10 will be removed from ports tree soon.
10 Jun 2012 18:42:48
Original commit files touched by this commit  1.17_2
swills search for other commits by this committer
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
  RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
  about for a while.

PR:             ports/168208
Approved by:    portmgr (miwi)
01 Jun 2012 05:26:28
Original commit files touched by this commit  1.17_2
dinoex search for other commits by this committer
- update png to 1.5.10
13 Mar 2012 16:15:36
Original commit files touched by this commit  1.17_1
pgollucci search for other commits by this committer
- Revert ports/165605 as requested by portmgr@

Note: devel/p5-B-Size and devel/p5-Devel-Arena
where intentionally not restored.

PR:             ports/165605
Approved by:    portmgr (bapt)
Feature safe:   yes (I sure hope so)
08 Mar 2012 18:45:38
Original commit files touched by this commit  1.17_1
pgollucci search for other commits by this committer
- Remove ports that only work with < perl 5.12 (devel/p5-B-Size,
devel/p5-Devel-Arena)
- Remove conditionals for PERL_LEVEL < 501200
- Remove regression-test targets b/c this will be centralized in Mk/bsd.perl.mk
- Other minor cleanups
  RUN_DEPENDS = ${BUILD_DEPENDS} -> RUN_DEPENDS:= ${BUILD_DEPENDS}

PR:             ports/165605
Submitted by:   pgollucci (myself)
Approved by:    portmgr (linimon)
Exp Run by:     linimon
Tested by:      make index
22 Oct 2011 23:50:23
Original commit files touched by this commit  1.17_1
eadler search for other commits by this committer
- remove maintainer tags from pkg-descr

Approved by:    portmgr
Approved by:    bapt (mentor)
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.17_1
miwi search for other commits by this committer
- Get Rid MD5 support
21 Sep 2010 07:56:43
Original commit files touched by this commit  1.17_1
  Sanity Test Failure
mm search for other commits by this committer
Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,
p5-IO-Compress-Zlib and p5-IO-Compress-Bzip2 modules to p5-IO-Compress.
Explicitly depend on p5-IO-Compress only if PERL_LEVEL < 500903
Bump PORTREVISION
30 Jun 2010 07:36:25
Original commit files touched by this commit  1.17
wen search for other commits by this committer
- Update to 1.17

Feature safe:   yes
24 Jun 2010 00:24:22
Original commit files touched by this commit  1.16
wen search for other commits by this committer
- Update to 1.16

Feature safe:   yes
12 Jun 2010 06:18:36
Original commit files touched by this commit  1.15
wen search for other commits by this committer
- Update to 1.15
28 Mar 2010 06:47:48
Original commit files touched by this commit  1.14_2
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
05 Feb 2010 11:46:55
Original commit files touched by this commit  1.14_1
dinoex search for other commits by this committer
- update to jpeg-8
08 Sep 2009 12:08:12
Original commit files touched by this commit  1.14
jadawin search for other commits by this committer
- Update to 1.14
27 Aug 2009 20:34:58
Original commit files touched by this commit  1.12
miwi search for other commits by this committer
- Update to 1.12

PR:             138230
Submitted by:   Wen Heping <wenheping@gmail.com>
31 Jul 2009 13:57:52
Original commit files touched by this commit  1.11_1
dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
22 Jul 2009 16:27:08
Original commit files touched by this commit  1.11
pgollucci search for other commits by this committer
- lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks

PR:             ports/135398
Tested by:      2 -exp runs by pav
Approved by:    portmgr (pav)
08 Jun 2009 09:30:07
Original commit files touched by this commit  1.11
jadawin search for other commits by this committer
- Update to 1.11
11 Dec 2008 05:19:13
Original commit files touched by this commit  1.10
leeym search for other commits by this committer
- update to 1.10
31 May 2008 13:46:14
Original commit files touched by this commit  1.09
miwi search for other commits by this committer
- Update to 1.09
23 May 2008 12:22:21
Original commit files touched by this commit  1.08
mat search for other commits by this committer
Update to 1.08
19 May 2008 13:12:08
Original commit files touched by this commit  1.07
araujo search for other commits by this committer
- Include some ports in perl5 category.

PR:             ports/123530
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    flz (portmgr)
17 Apr 2008 14:30:31
Original commit files touched by this commit  1.07
araujo search for other commits by this committer
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)
12 Mar 2008 12:24:10
Original commit files touched by this commit  1.07
miwi search for other commits by this committer
- Update to 1.07
07 Sep 2007 14:45:12
Original commit files touched by this commit  1.06
miwi search for other commits by this committer
- Update to 1.06
- Remove 4.X cruft
19 May 2007 20:32:57
Original commit files touched by this commit  1.03_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
14 Mar 2007 08:18:21
Original commit files touched by this commit  1.03
linimon search for other commits by this committer
Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response to
email.

Hat:            portmgr
19 Dec 2006 06:47:45
Original commit files touched by this commit  1.03
rafan search for other commits by this committer
- Update to 1.03

PR:             ports/106300
Submitted by:   chinsan
Approved by:    maintainer timeout (15 days)
03 Dec 2006 12:45:59
Original commit files touched by this commit  1.02
demon search for other commits by this committer
Correct path to Compress::Zlib.pm after recent p5-Compress-Zlib update.
22 Jan 2006 08:20:34
Original commit files touched by this commit  1.02
edwin search for other commits by this committer
SHA256ify

Approved by:    krion@
05 Jan 2006 22:31:12
Original commit files touched by this commit  1.02
pav search for other commits by this committer
- Remove symlinks that belong to mtree

Approved by:    maintainers
26 Nov 2005 03:40:59
Original commit files touched by this commit  1.02
fenner search for other commits by this committer
Add the right MASTER_SITE_SUBDIR, so that this port is fetchable from
 20 sites instead of just 1.
01 Sep 2005 13:09:33
Original commit files touched by this commit  1.02
garga search for other commits by this committer
Add p5-Bio-Das 1.02, client-side library for Distributed Genome
Annotation System.

PR:             ports/76379
Submitted by:   Razi Khaja <razi@genet.sickkids.on.ca>

Number of commits found: 36

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