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Port details
p5-Bio-GFF3 Fast low-level functions for parsing and formatting GFF3
2.0_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 22 Apr 2011 08:51:49
Also Listed In: perl5
License: ART10 GPLv1
Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.
All they do is convert back and forth between low-level Perl data
structures and GFF3 text.

WWW: http://search.cpan.org/dist/Bio-GFF3/
SVNWeb : Homepage : PortsMon

To install the port: cd /usr/ports/biology/p5-Bio-GFF3/ && make install clean
To add the package: pkg install p5-Bio-GFF3

PKGNAME: p5-Bio-GFF3

distinfo:

SHA256 (Bio-GFF3-2.0.tar.gz) = cbfef8376d3d9026483360150e3745a27dad78e995348d0c08ef5b2e4374170c
SIZE (Bio-GFF3-2.0.tar.gz) = 74951


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. p5-File-ReadBackwards>=0 : devel/p5-File-ReadBackwards
  2. p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
  3. p5-URI>=0 : net/p5-URI
  4. perl5>=5.20<5.21 : lang/perl5.20
Runtime dependencies:
  1. p5-File-ReadBackwards>=0 : devel/p5-File-ReadBackwards
  2. p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
  3. p5-URI>=0 : net/p5-URI
  4. perl5>=5.20<5.21 : lang/perl5.20
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
perl5

Master Sites:
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. ftp://ftp.sunet.se/pub/lang/perl/CPAN/modules/by-module/Bio/
  8. http://backpan.perl.org/modules/by-module/Bio/
  9. http://cpan.metacpan.org/modules/by-module/
  10. http://cpan.metacpan.org/modules/by-module/Bio/
  11. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  12. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  13. http://www.cpan.dk/modules/by-module/Bio/
  14. http://www.cpan.org/modules/by-module/Bio/

Number of commits found: 24

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
01 Apr 2016 13:29:17
Original commit files touched by this commit  2.0_2
Revision:412344
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
14 Sep 2015 12:19:50
Original commit files touched by this commit  2.0_2
Revision:396892
mat search for other commits by this committer
Make it so that the default Perl is always called perl5.

- Move Perl's man1 files along with its man3 files.
- Move where Perl installs its modules man1 pages.
- Convert the ports installing man1 pages.
- Make different Perl versions installable at the same time.
  Though you should note that only the default version can be used to
  install Perl modules, and the non default Perl versions cannot use the
  modules installed via ports if they contain .so as they are installed
  in a version specific directory.

Reviewed by:	bapt (the Mk bits)
Exp-run by:	antoine
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D3542
26 Nov 2014 13:08:38
Original commit files touched by this commit  2.0_2
Revision:373448
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Oct 2014 07:10:48
Original commit files touched by this commit  2.0_1
Revision:371237
bapt search for other commits by this committer
Cleanup plist
26 Mar 2014 14:23:09
Original commit files touched by this commit  2.0_1
Revision:349256
sunpoet search for other commits by this committer
- Fix PLIST
- Bump PORTREVISION for package change

Reported by:	swills
25 Mar 2014 19:34:04
Original commit files touched by this commit  2.0
Revision:349176
sunpoet search for other commits by this committer
- Update to 2.0

Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
23 Jan 2014 03:28:37
Original commit files touched by this commit  1.9
Revision:340794
sunpoet search for other commits by this committer
- Update to 1.9
- Sort PLIST

Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
02 Nov 2013 19:55:32
Original commit files touched by this commit  1.8
Revision:332533
sunpoet search for other commits by this committer
- Update to 1.8

Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
03 Oct 2013 16:19:59
Original commit files touched by this commit  1.7
Revision:329204
sunpoet search for other commits by this committer
- Update to 1.7
- Support STAGEDIR

Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.6
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
06 Aug 2013 13:03:54
Original commit files touched by this commit  1.6
Revision:324315
sunpoet search for other commits by this committer
- Pet portlint: remove blank line among *_DEPENDS
01 Aug 2013 13:15:49
Original commit files touched by this commit  1.6
Revision:324103
jadawin search for other commits by this committer
- Update to 1.6
- Convert to new perl5 framework
- Changelog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.6/Changes
16 Dec 2012 04:22:15
Original commit files touched by this commit  1.5
Revision:308979
wen search for other commits by this committer
- Update to 1.5
Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.5/Changes
30 Oct 2012 01:59:37
Original commit files touched by this commit  1.4
Revision:306654
wen search for other commits by this committer
- Update to 1.4
Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.4/Changes
- Trim Makefile headers

Feature safe:	yes
25 Jul 2012 06:32:08
Original commit files touched by this commit  1.3
cs search for other commits by this committer
Fix typos in COMMENT
26 Apr 2012 10:37:09
Original commit files touched by this commit  1.3
culot search for other commits by this committer
- Update to 1.3

Changes:        http://search.cpan.org/dist/Bio-GFF3/Changes
16 Apr 2012 13:06:04
Original commit files touched by this commit  1.2
culot search for other commits by this committer
- Update to 1.2
- Add LICENSE (Artistic 1 & GPL 1)
- Add TEST_DEPENDS

Changes:        http://search.cpan.org/dist/Bio-GFF3/Changes
22 Mar 2012 11:08:28
Original commit files touched by this commit  1.0
wen search for other commits by this committer
- Update to 1.0
- Reset maintainer to perl@

Feature safe:   yes
10 Oct 2011 02:33:51
Original commit files touched by this commit  0.7
wen search for other commits by this committer
- Update to 0.7
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.7/Changes
22 Sep 2011 07:34:49
Original commit files touched by this commit  0.6
wen search for other commits by this committer
- Update to 0.6
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.6/Changes
18 Aug 2011 01:30:02
Original commit files touched by this commit  0.5
swills search for other commits by this committer
- Add missing BUILD_DEPENDS

PR:             ports/159827
Submitted by:   swills (me)
Approved by:    wen (maintainer)
10 Jun 2011 08:12:40
Original commit files touched by this commit  0.5
wen search for other commits by this committer
- Update to 0.5
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.5/Changes
09 May 2011 06:32:51
Original commit files touched by this commit  0.4
wen search for other commits by this committer
- Update to 0.4
http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.4/Changes
22 Apr 2011 08:51:25
Original commit files touched by this commit  0.3
wen search for other commits by this committer
Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.
All they do is convert back and forth between low-level Perl data
structures and GFF3 text.

WWW: http://search.cpan.org/dist/Bio-GFF3/

Number of commits found: 24

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