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non port: biology/p5-Bio-GFF3/Makefile

Number of commits found: 27

Wednesday, 7 Sep 2022
21:10 Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Saturday, 6 Oct 2018
13:06 des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
Original commitRevision:481365 
Friday, 15 Sep 2017
08:58 mat search for other commits by this committer
Fix license information for portgs that use "the same license as Perl".

Sponsored by:	Absolight
Original commitRevision:449893 
Friday, 1 Apr 2016
13:29 mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Original commitRevision:412344 
Wednesday, 26 Nov 2014
13:08 mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
Perl version, minimizing the upgrade when the major Perl version is changed.
It uses a version dependent directory for modules with compiled bits.

As PERL_ARCH is no longer needed in plists, it has been removed from
PLIST_SUB.

The USE_PERL5=fixpacklist keyword is removed, the .packlist file is now
always removed, as is perllocal.pod.

The old site_perl and site_perl/arch directories have been kept in the
default Perl @INC for all Perl ports, and will be phased out as these old
Perl versions expire.

PR:		194969
Differential Revision:	https://reviews.freebsd.org/D1019
Exp-run by:	antoine
Reviewed by:	perl@
Approved by:	portmgr
Original commitRevision:373448 
Wednesday, 26 Mar 2014
14:23 sunpoet search for other commits by this committer
- Fix PLIST
- Bump PORTREVISION for package change

Reported by:	swills
Original commitRevision:349256 
Tuesday, 25 Mar 2014
19:34 sunpoet search for other commits by this committer
- Update to 2.0

Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
Original commitRevision:349176 
Thursday, 23 Jan 2014
03:28 sunpoet search for other commits by this committer
- Update to 1.9
- Sort PLIST

Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
Original commitRevision:340794 
Saturday, 2 Nov 2013
19:55 sunpoet search for other commits by this committer
- Update to 1.8

Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
Original commitRevision:332533 
Thursday, 3 Oct 2013
16:19 sunpoet search for other commits by this committer
- Update to 1.7
- Support STAGEDIR

Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
Original commitRevision:329204 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Tuesday, 6 Aug 2013
13:03 sunpoet search for other commits by this committer
- Pet portlint: remove blank line among *_DEPENDS
Original commitRevision:324315 
Thursday, 1 Aug 2013
13:15 jadawin search for other commits by this committer
- Update to 1.6
- Convert to new perl5 framework
- Changelog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.6/Changes
Original commitRevision:324103 
Sunday, 16 Dec 2012
04:22 wen search for other commits by this committer
- Update to 1.5
Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.5/Changes
Original commitRevision:308979 
Tuesday, 30 Oct 2012
01:59 wen search for other commits by this committer
- Update to 1.4
Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.4/Changes
- Trim Makefile headers

Feature safe:	yes
Original commitRevision:306654 
Wednesday, 25 Jul 2012
06:32 cs search for other commits by this committer
Fix typos in COMMENT
Original commit
Thursday, 26 Apr 2012
10:37 culot search for other commits by this committer
- Update to 1.3

Changes:        http://search.cpan.org/dist/Bio-GFF3/Changes
Original commit
Monday, 16 Apr 2012
13:06 culot search for other commits by this committer
- Update to 1.2
- Add LICENSE (Artistic 1 & GPL 1)
- Add TEST_DEPENDS

Changes:        http://search.cpan.org/dist/Bio-GFF3/Changes
Original commit
Thursday, 22 Mar 2012
11:08 wen search for other commits by this committer
- Update to 1.0
- Reset maintainer to perl@

Feature safe:   yes
Original commit
Monday, 10 Oct 2011
02:33 wen search for other commits by this committer
- Update to 0.7
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.7/Changes
Original commit
Thursday, 22 Sep 2011
07:34 wen search for other commits by this committer
- Update to 0.6
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.6/Changes
Original commit
Thursday, 18 Aug 2011
01:30 swills search for other commits by this committer
- Add missing BUILD_DEPENDS

PR:             ports/159827
Submitted by:   swills (me)
Approved by:    wen (maintainer)
Original commit
Friday, 10 Jun 2011
08:12 wen search for other commits by this committer
- Update to 0.5
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.5/Changes
Original commit
Monday, 9 May 2011
06:32 wen search for other commits by this committer
- Update to 0.4
http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.4/Changes
Original commit
Friday, 22 Apr 2011
08:51 wen search for other commits by this committer
Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.
All they do is convert back and forth between low-level Perl data
structures and GFF3 text.

WWW: http://search.cpan.org/dist/Bio-GFF3/
Original commit

Number of commits found: 27