p5-Bio-NEXUS 0.78 biology =0

An object-oriented Perl API for the NEXUS file format
Maintained by: perl@FreeBSD.org
Port Added: 22 Aug 2009 20:40:26
Also Listed In: perl5
License: not specified in port

---

---

Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on.  This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data). 

WWW: http://search.cpan.org/dist/Bio-NEXUS/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

---

NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: devel/p5-Clone-PP, lang/perl5.8
Required To Run: devel/p5-Clone-PP, lang/perl5.8
There are no ports dependent upon this port

---

To install the port: cd /usr/ports/biology/p5-Bio-NEXUS/ && make install clean
To add the package: pkg_add -r p5-Bio-NEXUS

---

Configuration Options

     No options to configure

---

Master Sites:

ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/

http://www.cpan.dk/modules/by-module/Bio/

ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/

http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/

ftp://ftp.dti.ad.jp/pub/lang/CPAN/modules/by-module/Bio/

ftp://ftp.sunet.se/pub/lang/perl/CPAN/modules/by-module/Bio/

ftp://mirror.hiwaay.net/CPAN/modules/by-module/Bio/

ftp://ftp.mirrorservice.org/sites/ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/

http://at.cpan.org/modules/by-module/Bio/

ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/

http://backpan.perl.org/modules/by-module/Bio/

ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/

http://cpan.nctu.edu.tw/modules/by-module/Bio/

http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Update to 0.78
- Sort TEST_DEPENDS, MAN1, MAN3 and PLIST

Changes:        http://search.cpan.org/dist/Bio-NEXUS/doc/changes.txt

- Update to 0.77

At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr

- Use canonical format for FreeBSD.org MAINTAINER addresses
- Remove obsolete MD5 checksum while I'm here

PR:             ports/152844
Submitted by:   sunpoet (myself)
Approved by:    miwi (with portmgr hat)

- Update to 0.76

- Update to 0.75
- Reset maintainer to perl@

Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on.  This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).

WWW: http://search.cpan.org/dist/Bio-NEXUS/

PR:             ports/137983
Submitted by:   Wen Heping <wenheping at gmail.com>

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities