FreshPorts -- The Place For Ports notbug Sat, 26 May 2012 1:38 AM BST
Port details
p5-Bio-Phylo 0.48 biology on this many watch lists=0 search for ports that depend on this port
Phylogenetic analysis using perl
Maintained by: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 13 May 2006 16:50:16
Also Listed In: perl5
License: ART10 GPLv1


This is the base class for the Bio::Phylo package. All other modules 
inherit from it, the methods defined here are applicable to all. Consult 
the manual for usage examples: Bio::Phylo::Manual.

WWW: http://search.cpan.org/dist/Bio-Phylo/
CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon
NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: graphics/p5-GD, math/p5-Math-CDF, math/p5-Math-Random, textproc/p5-PDF-API2, textproc/p5-SVG, graphics/p5-SWF-Builder, textproc/p5-XML-LibXML, textproc/p5-XML-Twig, textproc/p5-XML-XML2JSON, biology/p5-bioperl, textproc/p5-libxml, lang/perl5.8
Required To Run: graphics/p5-GD, math/p5-Math-CDF, math/p5-Math-Random, textproc/p5-PDF-API2, textproc/p5-SVG, graphics/p5-SWF-Builder, textproc/p5-XML-LibXML, textproc/p5-XML-Twig, textproc/p5-XML-XML2JSON, biology/p5-bioperl, textproc/p5-libxml, lang/perl5.8
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/p5-Bio-Phylo/ && make install clean
To add the package: pkg_add -r p5-Bio-Phylo


Configuration Options
     No options to configure

Master Sites:
ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
http://www.cpan.dk/modules/by-module/Bio/
ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
ftp://ftp.dti.ad.jp/pub/lang/CPAN/modules/by-module/Bio/
ftp://ftp.sunet.se/pub/lang/perl/CPAN/modules/by-module/Bio/
ftp://mirror.hiwaay.net/CPAN/modules/by-module/Bio/
ftp://ftp.mirrorservice.org/sites/ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
http://at.cpan.org/modules/by-module/Bio/
ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
http://backpan.perl.org/modules/by-module/Bio/
ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
http://cpan.nctu.edu.tw/modules/by-module/Bio/
http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Number of commits found: 33

Commit History - (may be incomplete: see CVSWeb link above for full details)
DateByDescription
03 May 2012 09:48:21
Original commit files touched by this commit  0.48
sunpoet search for other commits by this committer
- Update to 0.48
- Add BUILD_DEPENDS
11 Apr 2012 01:34:57
Original commit files touched by this commit  0.47
wen search for other commits by this committer
- Update to 0.47
05 Mar 2012 08:22:46
Original commit files touched by this commit  0.46
wen search for other commits by this committer
- Update to 0.46
29 Oct 2011 06:20:45
Original commit files touched by this commit  0.45
sunpoet search for other commits by this committer
- Update to 0.45
17 Oct 2011 01:38:22
Original commit files touched by this commit  0.43
sunpoet search for other commits by this committer
- Update to 0.43
09 Aug 2011 18:26:45
Original commit files touched by this commit  0.40
culot search for other commits by this committer
- Update to 0.40
- Add LICENSE (Artistic 1 & GPLv1)
01 Aug 2011 03:11:37
Original commit files touched by this commit  0.39
sunpoet search for other commits by this committer
- Update to 0.39
16 Jul 2011 06:08:34
Original commit files touched by this commit  0.38
sunpoet search for other commits by this committer
- Update to 0.38
- Sort MAN3 and PLIST
01 Apr 2011 08:34:03
Original commit files touched by this commit  0.36
wen search for other commits by this committer
- Update to 0.36
28 Feb 2011 01:30:15
Original commit files touched by this commit  0.35
wen search for other commits by this committer
- Update to 0.35
23 Dec 2010 06:33:33
Original commit files touched by this commit  0.34
wen search for other commits by this committer
- Update to 0.34
16 Dec 2010 08:19:56
Original commit files touched by this commit  0.33
wen search for other commits by this committer
- Update to 0.33
12 Dec 2010 21:29:40
Original commit files touched by this commit  0.32
pgollucci search for other commits by this committer
- Update to 0.32

With Hat:       perl@
Changes:        http://search.cpan.org/dist/Bio-Phylo/Changes
22 Nov 2010 08:50:40
Original commit files touched by this commit  0.31
wen search for other commits by this committer
- Update to 0.31
17 Nov 2010 06:24:38
Original commit files touched by this commit  0.30
wen search for other commits by this committer
- Update to 0.30

PR:             ports/152205
Submitted by:   Gea-Suan Lin <gslin@gslin.org>
09 Nov 2010 14:15:44
Original commit files touched by this commit  0.28
jadawin search for other commits by this committer
- Update to 0.28
25 Oct 2010 10:59:25
Original commit files touched by this commit  0.26
wen search for other commits by this committer
- Update to 0.26
- Reset maintainer to perl@
22 Oct 2010 09:29:44
Original commit files touched by this commit  0.22
wen search for other commits by this committer
- Update to 0.22
28 Mar 2010 06:47:48
Original commit files touched by this commit  0.21_1
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
09 Mar 2010 07:34:48
Original commit files touched by this commit  0.21
wen search for other commits by this committer
- Update to 0.21
03 Mar 2010 13:44:19
Original commit files touched by this commit  0.18
wen search for other commits by this committer
- Update to 0.18
- Adopt

Feature safe:   yes
05 Feb 2010 11:46:55
Original commit files touched by this commit  0.16_2
dinoex search for other commits by this committer
- update to jpeg-8
21 Dec 2009 02:19:12
Original commit files touched by this commit  0.16_1
dougb search for other commits by this committer
For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
31 Jul 2009 13:57:52
Original commit files touched by this commit  0.16_1
dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
29 Apr 2008 05:27:10
Original commit files touched by this commit  0.16
linimon search for other commits by this committer
Reset aaron's port maintainerships due to many maintainer-timeouts.
17 Apr 2008 14:30:31
Original commit files touched by this commit  0.16
araujo search for other commits by this committer
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)
08 Sep 2007 00:53:15
Original commit files touched by this commit  0.16
linimon search for other commits by this committer
Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr
19 Jun 2007 20:15:59
Original commit files touched by this commit  0.16
aaron search for other commits by this committer
Bump to v0.16.

PR:             111719
Submitted by:   araujo@bsdmail.org
19 May 2007 20:32:57
Original commit files touched by this commit  0.15_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
27 Dec 2006 18:58:26
Original commit files touched by this commit  0.15
aaron search for other commits by this committer
Update to v0.15
07 Dec 2006 15:43:27
Original commit files touched by this commit  0.14
laszlof search for other commits by this committer
- Update to 0.14

Submitted by:   Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw>
Approved by:    maintainer timeout (3 months)
19 May 2006 23:18:32
Original commit files touched by this commit  0.12
aaron search for other commits by this committer
- Updated from 0.07 to 0.12

Approved by:    tobez (implicit)

0.08 20/Feb/2006 15:14
                       Improved referential integrity between nodes,
                                taxa, and data.
                       Implemented Fastnexus parser
                       Node object silently implements Bio::Tree::NodeI
                                interface if BioPerl is installed
                       Tree object silently implements Bio::Tree::TreeI
                                interface if BioPerl is installed
                       Added convertor methods for XML and CIPRES
                       Implemented more Matrix methods
                       Implemented symbol tables in Bio::Phylo::Util::CONSTANT
                       Implemented visit method for listable objects
                       Implemented caching infrastructure for calculations
                       Changed object-model to inside-out arrays
                       Added Biodiversity measures code by Aki Mimoto
                       Moved constants and exceptions to Bio::Phylo::Util::*
                       Fixed memory leak due to circular references
13 May 2006 16:48:15
Original commit files touched by this commit  0.07
aaron search for other commits by this committer
Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl.

Approved by:    tobez (implicit)

Number of commits found: 33

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet
SuperNews

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
haproxyMay 24
foswikiMay 21
inspircd*May 21
inspircd12*May 21
sympaMay 21
sympa5May 21
libxml2May 18
pidgin-otrMay 16
sudoMay 16
chromiumMay 15
chromiumMay 15
pivotx*May 14
socatMay 14
libpurpleMay 12
php5May 12

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds


Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 23670
Broken 193
Deprecated 147
Ignore 735
Forbidden 3
Restricted 328
No CDROM 110
Vulnerable 0
Expired 41
Set to expire 188
Interactive 54
new 24 hours 15
new 48 hours33
new 7 days60
new fortnight181
new month255

This site
What is FreshPorts?
About the Authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Servers and bandwidth provided by
New York Internet
SuperNews
Valid HTML, CSS, and RSS.
Copyright © 2000-2012 DVL Software Limited. All rights reserved.
This page created in 0.208 seconds.