non port: biology/p5-Bio-Phylo/Makefile |
Number of commits found: 50 |
Wednesday, 7 Sep 2022
|
21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Wednesday, 20 Jul 2022
|
14:20 Tobias C. Berner (tcberner)
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca>
* Johann Visagie <johann@egenetics.com>
* Johann Visagie <wjv@FreeBSD.org>
* Mauricio Herrera Cuadra <mauricio@arareko.net>
* Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
* Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@niid.go.jp>
* Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Razi Khaja <razi@genet.sickkids.on.ca>
* Reed A. Cartwright <cartwright@asu.edu>
* Ryo MIYAMOTO
* Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
* Sangwoo Shim <sangwoos@gmail.com>
* Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Tassilo Philipp <tphilipp@potion-studios.com>
* Tony Maher
* Tony Maher <tonym@biolateral.com.au>
* Wen Heping <wen@FreeBSD.org>
* Wen Heping <wenheping@gmail.com>
* Yonatan <onatan@gmail.com>
* Yuri Victorovich <yuri@rawbw.com>
* ballen
* barnhart@genetics.wustl.edu
* camson@bilateral.com.au
* chuynh@biolateral.com.au
* dbader@eece.unm.edu
* frankch@waru.life.nthu.edu.tw
* h2
* lentferj
* maho@FreeBSD.org
* mzaki@biol.s.u-tokyo.ac.jp
* tonym
* wen@FreeBSD.org
With hat: portmgr
37526bb |
Tuesday, 6 Apr 2021
|
14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Saturday, 6 Oct 2018
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13:06 des
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.
Approved by: portmgr (adamw)
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Tuesday, 26 Dec 2017
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23:20 sunpoet
Update to 2.0.1
Changes: https://github.com/rvosa/bio-phylo/releases
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Friday, 15 Sep 2017
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08:58 mat
Fix license information for portgs that use "the same license as Perl".
Sponsored by: Absolight
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Sunday, 18 Dec 2016
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15:25 sunpoet
- Add LICENSE_FILE
- Add NO_ARCH
- Bump PORTREVISION for biology/p5-bioperl renaming
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Friday, 1 Apr 2016
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13:29 mat
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight
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Sunday, 7 Dec 2014
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04:41 wen
- Update to 0.58
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Wednesday, 26 Nov 2014
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13:08 mat
Change the way Perl modules are installed, update the default Perl to 5.18.
Before, we had:
site_perl : lib/perl5/site_perl/5.18
site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
perl_man3 : lib/perl5/5.18/man/man3
Now we have:
site_perl : lib/perl5/site_perl
site_arch : lib/perl5/site_perl/mach/5.18
perl_man3 : lib/perl5/site_perl/man/man3
Modules without any .so will be installed at the same place regardless of the
Perl version, minimizing the upgrade when the major Perl version is changed.
It uses a version dependent directory for modules with compiled bits.
As PERL_ARCH is no longer needed in plists, it has been removed from
PLIST_SUB.
The USE_PERL5=fixpacklist keyword is removed, the .packlist file is now
always removed, as is perllocal.pod.
The old site_perl and site_perl/arch directories have been kept in the
default Perl @INC for all Perl ports, and will be phased out as these old
Perl versions expire.
PR: 194969
Differential Revision: https://reviews.freebsd.org/D1019
Exp-run by: antoine
Reviewed by: perl@
Approved by: portmgr
|
Sunday, 5 Jan 2014
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12:07 az
- support stage
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Friday, 20 Sep 2013
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15:55 bapt
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Friday, 2 Aug 2013
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18:52 mat
- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default.
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Saturday, 20 Jul 2013
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10:04 wen
- Update to 0.56
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Saturday, 16 Feb 2013
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14:58 culot
- Update to 0.52 [1]
- Capitalize names (Perl) in COMMENT
PR: ports/176003 [1]
Submitted by: Gea-Suan Lin <gslin@gslin.org>
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Tuesday, 12 Jun 2012
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18:55 sunpoet
- Update to 0.50
- Add TEST_DEPENDS
- Sort PLIST
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Sunday, 3 Jun 2012
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15:12 sunpoet
- Update to 0.49
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Friday, 1 Jun 2012
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05:26 dinoex
- update png to 1.5.10
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Thursday, 3 May 2012
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09:48 sunpoet
- Update to 0.48
- Add BUILD_DEPENDS
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Wednesday, 11 Apr 2012
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01:34 wen
- Update to 0.47
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Monday, 5 Mar 2012
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08:22 wen
- Update to 0.46
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Saturday, 29 Oct 2011
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06:20 sunpoet
- Update to 0.45
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Monday, 17 Oct 2011
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01:38 sunpoet
- Update to 0.43
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Tuesday, 9 Aug 2011
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18:26 culot
- Update to 0.40
- Add LICENSE (Artistic 1 & GPLv1)
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Monday, 1 Aug 2011
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03:11 sunpoet
- Update to 0.39
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Saturday, 16 Jul 2011
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06:08 sunpoet
- Update to 0.38
- Sort MAN3 and PLIST
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Friday, 1 Apr 2011
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08:34 wen
- Update to 0.36
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Monday, 28 Feb 2011
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01:30 wen
- Update to 0.35
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Thursday, 23 Dec 2010
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06:33 wen
- Update to 0.34
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Thursday, 16 Dec 2010
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08:19 wen
- Update to 0.33
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Sunday, 12 Dec 2010
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21:29 pgollucci
- Update to 0.32
With Hat: perl@
Changes: http://search.cpan.org/dist/Bio-Phylo/Changes
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Monday, 22 Nov 2010
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08:50 wen
- Update to 0.31
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Wednesday, 17 Nov 2010
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06:24 wen
- Update to 0.30
PR: ports/152205
Submitted by: Gea-Suan Lin <gslin@gslin.org>
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Tuesday, 9 Nov 2010
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14:15 jadawin
- Update to 0.28
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Monday, 25 Oct 2010
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10:59 wen
- Update to 0.26
- Reset maintainer to perl@
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Friday, 22 Oct 2010
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09:29 wen
- Update to 0.22
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Sunday, 28 Mar 2010
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06:47 dinoex
- update to 1.4.1
Reviewed by: exp8 run on pointyhat
Supported by: miwi
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Tuesday, 9 Mar 2010
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07:34 wen
- Update to 0.21
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Wednesday, 3 Mar 2010
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13:44 wen
- Update to 0.18
- Adopt
Feature safe: yes
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Friday, 5 Feb 2010
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11:46 dinoex
- update to jpeg-8
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Friday, 31 Jul 2009
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13:57 dinoex
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by: edwin
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Tuesday, 29 Apr 2008
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05:27 linimon
Reset aaron's port maintainerships due to many maintainer-timeouts.
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Thursday, 17 Apr 2008
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14:30 araujo
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.
PR: ports/122674
Submitted by: Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by: araujo (myself)
Approved by: portmgr (pav)
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Saturday, 8 Sep 2007
|
00:53 linimon
Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.
Work done by: gabor
Sponsored by: Google Summer of Code 2007
Hat: portmgr
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Tuesday, 19 Jun 2007
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20:15 aaron
Bump to v0.16.
PR: 111719
Submitted by: araujo@bsdmail.org
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Saturday, 19 May 2007
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20:32 flz
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
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Wednesday, 27 Dec 2006
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18:58 aaron
Update to v0.15
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Thursday, 7 Dec 2006
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15:43 laszlof
- Update to 0.14
Submitted by: Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw>
Approved by: maintainer timeout (3 months)
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Friday, 19 May 2006
|
23:18 aaron
- Updated from 0.07 to 0.12
Approved by: tobez (implicit)
0.08 20/Feb/2006 15:14
Improved referential integrity between nodes,
taxa, and data.
Implemented Fastnexus parser
Node object silently implements Bio::Tree::NodeI
interface if BioPerl is installed
Tree object silently implements Bio::Tree::TreeI
interface if BioPerl is installed
Added convertor methods for XML and CIPRES
Implemented more Matrix methods
Implemented symbol tables in Bio::Phylo::Util::CONSTANT
Implemented visit method for listable objects
Implemented caching infrastructure for calculations
Changed object-model to inside-out arrays
Added Biodiversity measures code by Aki Mimoto
Moved constants and exceptions to Bio::Phylo::Util::*
Fixed memory leak due to circular references
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Saturday, 13 May 2006
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16:48 aaron
Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl.
Approved by: tobez (implicit)
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Number of commits found: 50 |