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Port details
p5-Bio-SCF Read and Update SCF Chromatographic Sequence Files
1.03_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 28 Aug 2009 23:38:55
Also Listed In: perl5
License: not specified in port
Bio::SCF module allows you to read and update (in a restricted
way) SCF chromatographic sequence files. It is an interface to
Roger Staden's io-lib. See the installation directions for further
instructions.

WWW: http://search.cpan.org/dist/Bio-SCF/
SVNWeb : Homepage : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. scf.h : biology/iolib
  2. perl5.20.2 : lang/perl5.20
Runtime dependencies:
  1. scf.h : biology/iolib
  2. perl5.20.2 : lang/perl5.20

This port is required by:

for Build for Run * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

To install the port: cd /usr/ports/biology/p5-Bio-SCF/ && make install clean
To add the package: pkg install biology/p5-Bio-SCF


Configuration Options
     No options to configure

USES:
perl5

Master Sites:
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. ftp://ftp.sunet.se/pub/lang/perl/CPAN/modules/by-module/Bio/
  8. http://backpan.perl.org/modules/by-module/Bio/
  9. http://cpan.metacpan.org/modules/by-module/Bio/
  10. http://distcache.FreeBSD.org/ports-distfiles/
  11. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  12. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  13. http://www.cpan.dk/modules/by-module/Bio/
  14. http://www.cpan.dk/modules/by-module/Bio/
  15. http://www.cpan.org/modules/by-module/Bio/

Number of commits found: 11

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
26 Nov 2014 13:08:38
Original commit files touched by this commit  1.03_1
Revision:373448
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Oct 2014 07:10:48
Original commit files touched by this commit  1.03
Revision:371237
bapt search for other commits by this committer
Cleanup plist
10 Jun 2014 12:14:14
Original commit files touched by this commit  1.03
Revision:357300
mat search for other commits by this committer
Remove all the bootstrap files (.bs) from the plists.

Starting with perl 5.20, they're not installed any more if empty,
and on FreeBSD, they're (always ?) empty.

PR:		190681
Submitted by:	mat
Exp-Run by:	antoine
Sponsored by:	Absolight
06 Jan 2014 09:44:20
Original commit files touched by this commit  1.03
Revision:338851
az search for other commits by this committer
- add stage support

Approved by:	portmgr (blanket infrastructure)
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.03
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
06 Aug 2013 08:50:49
Original commit files touched by this commit  1.03
Revision:324306
az search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header

Approved by:	wen@ (maintainer)
01 Jun 2013 14:22:36
Original commit files touched by this commit  1.03
Revision:319570
wen search for other commits by this committer
- Trim Makefile headers
21 Jan 2012 17:40:15
Original commit files touched by this commit  1.03
eadler search for other commits by this committer
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.03
miwi search for other commits by this committer
- Get Rid MD5 support
09 Jan 2010 01:21:21
Original commit files touched by this commit  1.03
wen search for other commits by this committer
- Update to 1.03
- Update my mail address to FreeBSD
28 Aug 2009 23:36:09
Original commit files touched by this commit  1.01
miwi search for other commits by this committer
Bio::SCF module allows you to read and update (in a restricted
way) SCF chromatographic sequence files. It is an interface to
Roger Staden's io-lib. See the installation directions for further
instructions.

WWW:    http://search.cpan.org/dist/Bio-SCF/

PR:             ports/138263
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 11

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