p5-bioperl-devel 1.5.1_1 biology =2

A collection of Perl modules for bioinformatics (developer release)
Maintained by: mauricio@arareko.net
Port Added: 14 Aug 2001 07:36:36
Also Listed In: perl5

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The Bioperl Project is an international association of developers of open
source Perl tools for bioinformatics, genomics and life science research. 

Bioperl is a collection of object-oriented Perl modules created by the
Bioperl Project.  It forms the basis of a large number of bioinformatics and
genomics applications.

(For an interesting aside on "How Perl saved the Human Genome Project", see
http://bioperl.org/GetStarted/tpj_ls_bio.html)

WWW: http://bioperl.org/

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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Required To Build: lang/perl5.8, lang/perl5.8, biology/p5-Bio-ASN1-EntrezGene, devel/p5-Class-AutoClass, devel/p5-Data-Stag, devel/p5-Data-Stag, devel/p5-Data-Stag, graphics/p5-GD-SVG, math/p5-Graph, www/p5-libwww, devel/p5-IO-stringy, devel/p5-IO-String, www/p5-libwww, net/p5-SOAP-Lite, textproc/p5-SVG, graphics/p5-SVG-Graph, textproc/p5-Text-Shellwords, textproc/p5-XML-DOM, textproc/p5-XML-DOM-XPath, textproc/p5-libxml, textproc/p5-XML-SAX, textproc/p5-XML-SAX, textproc/p5-XML-SAX-Writer, textproc/p5-XML-Twig, textproc/p5-XML-Writer, biology/p5-AcePerl, devel/p5-Clone, databases/p5-DBD-mysql, graphics/p5-GD, www/p5-HTML-Parser, www/p5-HTML-Parser, devel/p5-Storable, textproc/p5-XML-Parser, lang/perl5.8
Required To Run: lang/perl5.8, lang/perl5.8, biology/p5-Bio-ASN1-EntrezGene, devel/p5-Class-AutoClass, devel/p5-Data-Stag, devel/p5-Data-Stag, devel/p5-Data-Stag, graphics/p5-GD-SVG, math/p5-Graph, www/p5-libwww, devel/p5-IO-stringy, devel/p5-IO-String, www/p5-libwww, net/p5-SOAP-Lite, textproc/p5-SVG, graphics/p5-SVG-Graph, textproc/p5-Text-Shellwords, textproc/p5-XML-DOM, textproc/p5-XML-DOM-XPath, textproc/p5-libxml, textproc/p5-XML-SAX, textproc/p5-XML-SAX, textproc/p5-XML-SAX-Writer, textproc/p5-XML-Twig, textproc/p5-XML-Writer, biology/p5-AcePerl, devel/p5-Clone, databases/p5-DBD-mysql, graphics/p5-GD, www/p5-HTML-Parser, www/p5-HTML-Parser, devel/p5-Storable, textproc/p5-XML-Parser, lang/perl5.8, lang/perl5.8

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To install the port: cd /usr/ports/biology/p5-bioperl-devel/ && make install clean
To add the package: pkg_add -r p5-bioperl-devel

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Configuration Options

     No options to configure

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Master Sites:

http://bioperl.org/DIST/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr

- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)

Add conflicts:

    CONFLICTS= p5-bioperl-1.[02468]*

Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>, Mauricio Herrera Cuadra
<arareko@yahoo.com>

Fix port: biology/p5-bioperl-devel

      This patch adds a LATEST_LINK line in the Makefile to avoid
      duplication with the 'p5-bioperl' port in the packages/Latest
      directory.

PR:             ports/89916
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>

- Re-add p5-bioperl-devel, development version of biology/p5-bioperl
  (A collection of Perl modules for bioinformatics)

PR:             ports/89497
Submitted by:   Mauricio Herrera Cuadra <arareko@yahoo.com>

As announced on May 6, remove the broken p5-bioperl-devel port.

BROKEN: Broken pkg-plist

Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.

- Add NO_LATEST_LINK, which should've been there in the first place.  :-(    

- Move the (very) long list of manpages from the port Makefile to a separate    
file.    

Add p5-bioperl-devel 0.9.0,   a collection of Perl modules for   bioinformatics
(developer's release).    

10 vulnerabilities affecting 29 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities