FreshPorts -- The Place For Ports Sun, 6 Jul 2008 5:49 AM BST
FreshPorts is now runing off the BETA server. Enjoy for now.
Port details
p5-bioperl-devel 1.5.1_1 biology on this many watch lists=2 search for ports that depend on this port
A collection of Perl modules for bioinformatics (developer release)
Maintained by: mauricio@arareko.net search for ports maintained by this maintainer
Port Added: 14 Aug 2001 07:36:36
Also Listed In: perl5


The Bioperl Project is an international association of developers of open
source Perl tools for bioinformatics, genomics and life science research. 

Bioperl is a collection of object-oriented Perl modules created by the
Bioperl Project.  It forms the basis of a large number of bioinformatics and
genomics applications.

(For an interesting aside on "How Perl saved the Human Genome Project", see
http://bioperl.org/GetStarted/tpj_ls_bio.html)

WWW: http://bioperl.org/
CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon
Required To Build: lang/perl5.8, lang/perl5.8, biology/p5-Bio-ASN1-EntrezGene, devel/p5-Class-AutoClass, devel/p5-Data-Stag, devel/p5-Data-Stag, devel/p5-Data-Stag, graphics/p5-GD-SVG, math/p5-Graph, www/p5-libwww, devel/p5-IO-stringy, devel/p5-IO-String, www/p5-libwww, net/p5-SOAP-Lite, textproc/p5-SVG, graphics/p5-SVG-Graph, textproc/p5-Text-Shellwords, textproc/p5-XML-DOM, textproc/p5-XML-DOM-XPath, textproc/p5-libxml, textproc/p5-XML-SAX, textproc/p5-XML-SAX, textproc/p5-XML-SAX-Writer, textproc/p5-XML-Twig, textproc/p5-XML-Writer, biology/p5-AcePerl, devel/p5-Clone, databases/p5-DBD-mysql, graphics/p5-GD, www/p5-HTML-Parser, www/p5-HTML-Parser, devel/p5-Storable, textproc/p5-XML-Parser, lang/perl5.8
Required To Run: lang/perl5.8, lang/perl5.8, biology/p5-Bio-ASN1-EntrezGene, devel/p5-Class-AutoClass, devel/p5-Data-Stag, devel/p5-Data-Stag, devel/p5-Data-Stag, graphics/p5-GD-SVG, math/p5-Graph, www/p5-libwww, devel/p5-IO-stringy, devel/p5-IO-String, www/p5-libwww, net/p5-SOAP-Lite, textproc/p5-SVG, graphics/p5-SVG-Graph, textproc/p5-Text-Shellwords, textproc/p5-XML-DOM, textproc/p5-XML-DOM-XPath, textproc/p5-libxml, textproc/p5-XML-SAX, textproc/p5-XML-SAX, textproc/p5-XML-SAX-Writer, textproc/p5-XML-Twig, textproc/p5-XML-Writer, biology/p5-AcePerl, devel/p5-Clone, databases/p5-DBD-mysql, graphics/p5-GD, www/p5-HTML-Parser, www/p5-HTML-Parser, devel/p5-Storable, textproc/p5-XML-Parser, lang/perl5.8, lang/perl5.8

To install the port: cd /usr/ports/biology/p5-bioperl-devel/ && make install clean
To add the package: pkg_add -r p5-bioperl-devel


Configuration Options
     No options to configure

Master Sites:
http://bioperl.org/DIST/
ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Number of commits found: 12

Commit History - (may be incomplete: see CVSWeb link above for full details)
DateByDescription
08 Sep 2007 01:53:15
Original commit files touched by this commit  1.5.1_1
linimon search for other commits by this committer
Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr
19 May 2007 21:32:57
Original commit files touched by this commit  1.5.1_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
22 Jan 2006 01:25:24
Original commit files touched by this commit  1.5.1
edwin search for other commits by this committer
Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)
04 Dec 2005 22:12:48
Original commit files touched by this commit  1.5.1
edwin search for other commits by this committer
Add conflicts:

    CONFLICTS= p5-bioperl-1.[02468]*

Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>, Mauricio Herrera Cuadra
<arareko@yahoo.com>
04 Dec 2005 06:24:05
Original commit files touched by this commit  1.5.1
edwin search for other commits by this committer
Fix port: biology/p5-bioperl-devel

      This patch adds a LATEST_LINK line in the Makefile to avoid
      duplication with the 'p5-bioperl' port in the packages/Latest
      directory.

PR:             ports/89916
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
02 Dec 2005 21:40:12
Original commit files touched by this commit  1.5.1
barner search for other commits by this committer
- Re-add p5-bioperl-devel, development version of biology/p5-bioperl
  (A collection of Perl modules for bioinformatics)

PR:             ports/89497
Submitted by:   Mauricio Herrera Cuadra <arareko@yahoo.com>
08 Aug 2003 04:29:16
Original commit files touched by this commit  0.9.0
kris search for other commits by this committer
As announced on May 6, remove the broken p5-bioperl-devel port.
07 May 2003 00:36:56
Original commit files touched by this commit  0.9.0
kris search for other commits by this committer
BROKEN: Broken pkg-plist
07 Mar 2003 05:56:43
Original commit files touched by this commit  0.9.0
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
20 Sep 2001 17:11:14
files touched by this commit
wjv search for other commits by this committer
- Add NO_LATEST_LINK, which should've been there in the first place.  :-(    
20 Aug 2001 14:41:11
files touched by this commit
wjv search for other commits by this committer
- Move the (very) long list of manpages from the port Makefile to a separate    
file.    
14 Aug 2001 11:36:36
files touched by this commit
wjv search for other commits by this committer
Add p5-bioperl-devel 0.9.0,   a collection of Perl modules for   bioinformatics
(developer's release).    

Number of commits found: 12

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet
SuperNews

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
py-pylonsJul 04
freetype2Jul 03
fetchmailJul 01
squid*Jun 28
squid24*Jun 28
squid30*Jun 28
apache22Jun 24
php5-posix*Jun 22
firefox*Jun 21
firefox-devel*Jun 21
firefox10*Jun 21
firefox15*Jun 21
linux-firefox*Jun 21
linux-firefox-devel*Jun 21
linux-mozilla*Jun 21

10 vulnerabilities affecting 29 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds


Statistics
Graphs
Traffic

Calculated hourly:
Port count 18752
Broken 146
Deprecated 98
Ignore 429
Forbidden 5
Restricted 361
No CDROM 126
Vulnerable 52
Expired 13
Set to expire 77
Interactive 79
new 24 hours 8
new 48 hours11
new 7 days38
new fortnight74
new month182

This site
What is FreshPorts?
About the Authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Add tab to Netscape 6

Servers and bandwidth provided by
New York Internet
SuperNews
Valid HTML, CSS, and RSS.
Copyright © 2000-2008 DVL Software Limited. All rights reserved.
This page created in 0.232 seconds.