FreshPorts -- The Place For Ports notbug Thu, 9 Feb 2012 9:55 PM GMT
Port details
p5-bioperl-run 1.6.1_3 biology on this many watch lists=1 search for ports that depend on this port
Wrapper modules for common bioinformatics tools
Maintained by: mauricio@arareko.net search for ports maintained by this maintainer
Port Added: 02 May 2006 21:32:38
Also Listed In: perl5
License: not specified in port


Bioperl-run contain modules that provides a PERL interface to various
bioinformatics applications. This allows various applications to be used
with common Bioperl objects.

WWW: http://bioperl.org/
CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon
NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: biology/p5-bioperl, devel/p5-IPC-Run, devel/p5-Algorithm-Diff, devel/p5-Module-Build, lang/perl5.8
Required To Run: biology/p5-bioperl, devel/p5-IPC-Run, devel/p5-Algorithm-Diff, lang/perl5.8
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/p5-bioperl-run/ && make install clean
To add the package: pkg_add -r p5-bioperl-run


Configuration Options
     No options to configure

Master Sites:
http://bioperl.org/DIST/
ftp://ftp.cpan.org/pub/CPAN/modules/by-module/bioperl/
http://www.cpan.dk/modules/by-module/bioperl/
ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/bioperl/
http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/bioperl/
ftp://ftp.dti.ad.jp/pub/lang/CPAN/modules/by-module/bioperl/
ftp://ftp.sunet.se/pub/lang/perl/CPAN/modules/by-module/bioperl/
ftp://mirror.hiwaay.net/CPAN/modules/by-module/bioperl/
ftp://ftp.mirrorservice.org/sites/ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/bioperl/
http://at.cpan.org/modules/by-module/bioperl/
ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/bioperl/
http://backpan.perl.org/modules/by-module/bioperl/
ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/bioperl/
http://cpan.nctu.edu.tw/modules/by-module/bioperl/
http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/bioperl/
ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

Number of commits found: 12

Commit History - (may be incomplete: see CVSWeb link above for full details)
DateByDescription
21 Jan 2012 17:40:15
Original commit files touched by this commit  1.6.1_3
eadler search for other commits by this committer
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.6.1_3
miwi search for other commits by this committer
- Get Rid MD5 support
28 Mar 2010 06:47:48
Original commit files touched by this commit  1.6.1_3
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
05 Feb 2010 11:46:55
Original commit files touched by this commit  1.6.1_2
dinoex search for other commits by this committer
- update to jpeg-8
02 Aug 2009 20:00:09
Original commit files touched by this commit  1.6.1_1
pav search for other commits by this committer
- Relax check on bioperl version; people keep forgetting to update this check
  when updating bioperl port

Reported by:    pointyhat
31 Jul 2009 13:57:52
Original commit files touched by this commit  1.6.1_1
dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
19 Mar 2009 20:54:05
Original commit files touched by this commit  1.6.1
miwi search for other commits by this committer
- Update to 1.6.1

PR:             132122
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
15 Jan 2009 22:47:02
Original commit files touched by this commit  1.4_1
pav search for other commits by this committer
- Unbreak after p5-bioperl changed portrevision
17 Apr 2008 14:30:31
Original commit files touched by this commit  1.4_1
araujo search for other commits by this committer
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)
08 Sep 2007 00:53:15
Original commit files touched by this commit  1.4_1
linimon search for other commits by this committer
Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr
19 May 2007 20:32:57
Original commit files touched by this commit  1.4_1
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
02 May 2006 21:30:08
Original commit files touched by this commit  1.4
garga search for other commits by this committer
Bioperl-run contain modules that provides a PERL interface to various
bioinformatics applications. This allows various applications to be used
with common Bioperl objects.

WWW: http://bioperl.org/

PR:             ports/93674
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>

Number of commits found: 12

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