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non port: head/biology/p5-bioperl-run/Makefile
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Number of commits found: 26

Fri, 1 Apr 2016
[ 13:29 mat ] Original commit   Revision:412344
412344 Mk/Uses/gecko.mk
412344 Mk/bsd.fpc.mk
412344 Mk/bsd.gecko.mk
412344 Mk/bsd.port.mk
412344 accessibility/accerciser/Makefile
412344 accessibility/at-spi/Makefile
412344 accessibility/at-spi2-atk/Makefile
412344 accessibility/at-spi2-core/Makefile
412344 accessibility/caribou/Makefile
412344 accessibility/dasher/Makefile

(Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Fri, 20 Mar 2015
[ 09:43 mat ] Original commit   Revision:381726
381726 biology/p5-bioperl-run/Makefile
381726 biology/p5-bioperl-run/distinfo
Convert to new USE_GITHUB.

While there, cleanup.

Sponsored by:	Absolight
Thu, 12 Mar 2015
[ 23:00 adamw ] Original commit   Revision:381151
381151 archivers/p5-Archive-Rar/Makefile
381151 archivers/p5-Archive-SimpleExtractor/Makefile
381151 archivers/p5-Compress-LZ4/pkg-plist
381151 archivers/p5-Compress-LZO/pkg-plist
381151 archivers/p5-Compress-LZW/pkg-plist
381151 archivers/p5-Mac-Macbinary/pkg-plist
381151 archivers/p5-PerlIO-via-Bzip2/pkg-plist
381151 astro/p5-Astro-Catalog/pkg-plist
381151 astro/p5-Astro-FITS-Header/pkg-plist
381151 astro/p5-Astro-Hipparcos/Makefile

(Only the first 10 of 229 ports in this commit are shown above. View all ports for this commit)
Some OCD cleanups on some of the perl@ ports.

- Remove dependencies in core
- Put testing depends in TEST_DEPENDS
- Remove unnecessary bsd.port.options.mk inclusions
- Remove checks for Perl versions that no longer exist in the ports tree
- Sort plists, some of which were so jumbled that I have to assume
  the plist was randomized before committing

A lot of the plist changes in this commit are moving PERL5_MAN3 after
SITE_PERL. It's repo churn now, but it makes updating the ports later
far easier.
Sun, 18 Jan 2015
[ 22:49 sunpoet ] Original commit   Revision:377369
377369 biology/p5-bioperl-run/Makefile
377369 biology/p5-bioperl-run/pkg-plist
- Simplify Makefile
- Use tab instead of space
- Sort PLIST
- Pass maintainership to perl@
Wed, 26 Nov 2014
[ 13:08 mat ] Original commit   Revision:373448
373448 CHANGES
373448 Mk/Uses/perl5.mk
373448 Mk/bsd.default-versions.mk
373448 Mk/bsd.port.mk
373448 UPDATING
373448 archivers/dpkg/Makefile
373448 archivers/p5-Archive-Any-Lite/Makefile
373448 archivers/p5-Archive-Any-Lite/pkg-plist
373448 archivers/p5-Archive-Any-Plugin-Rar/Makefile
373448 archivers/p5-Archive-Any-Plugin-Rar/pkg-plist

(Only the first 10 of 10077 ports in this commit are shown above. View all ports for this commit)
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Mon, 4 Aug 2014
[ 08:54 pi ] Original commit   Revision:363975
363975 biology/p5-bioperl-run/Makefile
363975 biology/p5-bioperl-run/distinfo
363975 biology/p5-bioperl-run/files
363975 biology/p5-bioperl-run/files/patch-Build.PL
363975 biology/p5-bioperl-run/pkg-descr
363975 biology/p5-bioperl-run/pkg-plist
biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagify
Wed, 23 Jul 2014
[ 16:44 bapt ] Original commit   Revision:362705
362705 benchmarks/himenobench/Makefile
362705 benchmarks/spec-sfs/Makefile
362705 biology/crux/Makefile
362705 biology/embassy/Makefile
362705 biology/p5-bioperl-run/Makefile
362705 biology/phd2fasta/Makefile
362705 biology/protomol/Makefile
362705 biology/pymol/Makefile
362705 cad/alliance/Makefile
362705 cad/cider/Makefile

(Only the first 10 of 55 ports in this commit are shown above. View all ports for this commit)
Reset maintainership for ports not staged with no pending PR

With hat:	portmgr
Thu, 19 Jun 2014
[ 21:31 antoine ] Original commit   Revision:358466
358466 biology/p5-bioperl-run/Makefile
Mark BROKEN: Fails to configure

===>  Configuring for p5-bioperl-run-1.6.1_4
Invalid prerequisite condition '0/processing XML
data/Bio::Tools::Run::EMBOSSacd' for XML::Twig at
/usr/local/lib/perl5/site_perl/5.16/Module/Build/Base.pm line 1702.
*** [do-configure] Error code 25

Reported by:	pkg-fallout
With hat:	portmgr
Fri, 21 Feb 2014
[ 13:35 ehaupt ] Original commit   Revision:345397
345397 biology/biojava/Makefile
345397 biology/consed/Makefile
345397 biology/finchtv/Makefile
345397 biology/genpak/Makefile
345397 biology/mummer/Makefile
345397 biology/njplot/Makefile
345397 biology/p5-bioperl-run/Makefile
345397 biology/p5-bioperl/Makefile
345397 biology/paml/Makefile
345397 biology/velvet/Makefile
Remove trailing whitespaces from category biology
Mon, 10 Feb 2014
[ 13:54 ehaupt ] Original commit   Revision:343634
343634 archivers/aolserver-nszlib/Makefile
343634 archivers/dact/Makefile
343634 archivers/freeze/Makefile
343634 archivers/javatar/Makefile
343634 archivers/lha-ac/Makefile
343634 archivers/libpar2/Makefile
343634 archivers/lzo2/Makefile
343634 archivers/makeself/Makefile
343634 archivers/py-lzma/Makefile
343634 archivers/ruby-libarchive/Makefile

(Only the first 10 of 581 ports in this commit are shown above. View all ports for this commit)
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
Fri, 3 Jan 2014
[ 15:46 adamw ] Original commit   Revision:338550
338550 biology/biojava/Makefile
338550 biology/blast/Makefile
338550 biology/consed/Makefile
338550 biology/finchtv/Makefile
338550 biology/mafft/Makefile
338550 biology/mummer/Makefile
338550 biology/njplot/Makefile
338550 biology/p5-bioperl-run/Makefile
338550 biology/p5-bioperl/Makefile
338550 biology/paml/Makefile

(Only the first 10 of 14 ports in this commit are shown above. View all ports for this commit)
Convert biology to MDOCS and MEXAMPLES
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Sat, 7 Sep 2013
[ 07:44 az ] Original commit   Revision:326575
326575 biology/consed/Makefile
326575 biology/p5-Bio-ASN1-EntrezGene/Makefile
326575 biology/p5-bioperl-run/Makefile
326575 biology/velvet/Makefile
326575 devel/p5-Config-YAML/Makefile
326575 devel/p5-MooseX-CompileTime-Traits/Makefile
326575 devel/p5-Sys-Cpu/Makefile
326575 sysutils/backupme/Makefile
326575 sysutils/p5-BSD-Sysctl/Makefile
326575 sysutils/p5-Filesys-DiskUsage/Makefile

(Only the first 10 of 19 ports in this commit are shown above. View all ports for this commit)
- convert to the new perl5 framework

Approved by:	portmgr (bapt@, blanket)
Sat, 30 Jun 2012
[ 14:48 az ] Original commit 
1.6 astro/p5-Weather-Underground/Makefile
1.9 astro/weatherspect/Makefile
1.13 biology/p5-bioperl-run/Makefile
1.97 comms/gnokii/Makefile
1.15 comms/gscmxx/Makefile
1.3 comms/p5-SMS-SMS77/Makefile
1.6 comms/p5-SMS-Send-TW-PChome/Makefile
1.5 converters/p5-JSON-XS-VersionOneAndTwo/Makefile
1.3 converters/p5-MIME-Base64-URLSafe/Makefile
1.8 converters/ytnef/Makefile

(Only the first 10 of 24 ports in this commit are shown above. View all ports for this commit)
- Remove SITE_PERL from *_DEPENDS

Approved by: portmgr@ (bapt@)
Fri, 1 Jun 2012
[ 05:26 dinoex ] Original commit 
1.59 Mk/bsd.gecko.mk
1.1246 UPDATING
1.18 accessibility/accerciser/Makefile
1.12 accessibility/at-poke/Makefile
1.77 accessibility/at-spi/Makefile
1.5 accessibility/at-spi2-atk/Makefile
1.54 accessibility/dasher/Makefile
1.60 accessibility/gnome-mag/Makefile
1.45 accessibility/gnopernicus/Makefile
1.51 accessibility/gok/Makefile

(Only the first 10 of 4371 ports in this commit are shown above. View all ports for this commit)
- update png to 1.5.10
Sat, 21 Jan 2012
[ 17:40 eadler ] Original commit 
1.13 astro/p5-Astro-Catalog/Makefile
1.11 astro/p5-Astro-SunTime/Makefile
1.7 astro/py-RO/Makefile
1.10 astro/py-aipy/Makefile
1.3 astro/py-pyfits/Makefile
1.8 audio/calf/Makefile
1.30 audio/gnupod/Makefile
1.3 audio/jack_mixer/Makefile
1.61 audio/muine/Makefile
1.8 audio/p5-Audio-Scrobbler/Makefile

(Only the first 10 of 1326 ports in this commit are shown above. View all ports for this commit)
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
Sun, 28 Mar 2010
[ 06:47 dinoex ] Original commit 
1.20 Mk/bsd.gecko.mk
1.12 accessibility/accerciser/Makefile
1.10 accessibility/at-poke/Makefile
1.72 accessibility/at-spi/Makefile
1.51 accessibility/dasher/Makefile
1.54 accessibility/gnome-mag/Makefile
1.42 accessibility/gnopernicus/Makefile
1.46 accessibility/gok/Makefile
1.11 accessibility/java-access-bridge/Makefile
1.32 accessibility/kdeaccessibility/Makefile

(Only the first 10 of 4470 ports in this commit are shown above. View all ports for this commit)
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
Fri, 5 Feb 2010
[ 11:46 dinoex ] Original commit 
1.19 Mk/bsd.gecko.mk
1.11 accessibility/accerciser/Makefile
1.9 accessibility/at-poke/Makefile
1.71 accessibility/at-spi/Makefile
1.50 accessibility/dasher/Makefile
1.53 accessibility/gnome-mag/Makefile
1.41 accessibility/gnopernicus/Makefile
1.45 accessibility/gok/Makefile
1.10 accessibility/java-access-bridge/Makefile
1.31 accessibility/kdeaccessibility/Makefile

(Only the first 10 of 4271 ports in this commit are shown above. View all ports for this commit)
- update to jpeg-8
Sun, 2 Aug 2009
[ 20:00 pav ] Original commit 
1.8 biology/p5-bioperl-run/Makefile
- Relax check on bioperl version; people keep forgetting to update this check
  when updating bioperl port

Reported by:    pointyhat
Fri, 31 Jul 2009
[ 13:57 dinoex ] Original commit 
1.9 accessibility/accerciser/Makefile
1.8 accessibility/at-poke/Makefile
1.69 accessibility/at-spi/Makefile
1.49 accessibility/dasher/Makefile
1.40 accessibility/gnopernicus/Makefile
1.43 accessibility/gok/Makefile
1.8 accessibility/java-access-bridge/Makefile
1.29 accessibility/kdeaccessibility/Makefile
1.35 accessibility/kdeaccessibility4/Makefile
1.11 accessibility/mousetweaks/Makefile

(Only the first 10 of 3009 ports in this commit are shown above. View all ports for this commit)
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
Thu, 19 Mar 2009
[ 20:54 miwi ] Original commit 
1.6 biology/p5-bioperl-run/Makefile
1.2 biology/p5-bioperl-run/distinfo
1.2 biology/p5-bioperl-run/pkg-plist
- Update to 1.6.1

PR:             132122
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
Thu, 15 Jan 2009
[ 22:47 pav ] Original commit 
1.5 biology/p5-bioperl-run/Makefile
- Unbreak after p5-bioperl changed portrevision
Thu, 17 Apr 2008
[ 14:30 araujo ] Original commit 
1.9 archivers/p5-Archive-Extract/Makefile
1.8 archivers/p5-Compress-Bzip2/Makefile
1.5 archivers/p5-Compress-LZW/Makefile
1.5 archivers/p5-PerlIO-gzip/Makefile
1.3 archivers/p5-PerlIO-via-Bzip2/Makefile
1.12 astro/p5-Astro-Catalog/Makefile
1.10 astro/p5-Astro-MoonPhase/Makefile
1.6 astro/p5-Astro-Sunrise/Makefile
1.8 astro/p5-GPS/Makefile
1.3 audio/p5-Audio-Beep/Makefile

(Only the first 10 of 2168 ports in this commit are shown above. View all ports for this commit)
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)
Sat, 8 Sep 2007
[ 00:53 linimon ] Original commit 
1.2 benchmarks/p5-Benchmark-Stopwatch/Makefile
1.17 biology/p5-AcePerl/Makefile
1.2 biology/p5-Bio-ASN1-EntrezGene/Makefile
1.7 biology/p5-Bio-Phylo/Makefile
1.11 biology/p5-bioperl-devel/Makefile
1.3 biology/p5-bioperl-run-devel/Makefile
1.3 biology/p5-bioperl-run/Makefile
1.16 biology/p5-bioperl/Makefile
1.2 cad/p5-GDS2/Makefile
1.13 chinese/oicq/Makefile

(Only the first 10 of 30 ports in this commit are shown above. View all ports for this commit)
Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr
Sat, 19 May 2007
[ 20:32 flz ] Original commit 
1.1364 MOVED
1.566 Mk/bsd.port.mk
1.1 Mk/bsd.xorg.mk
1.1 Tools/scripts/mergebase.sh
1.502 UPDATING
1.2 accessibility/at-poke/Makefile
1.60 accessibility/at-spi/Makefile
1.29 accessibility/at-spi/pkg-plist
1.51 accessibility/atk/Makefile
1.27 accessibility/atk/pkg-plist

(Only the first 10 of 7868 ports in this commit are shown above. View all ports for this commit)
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
Tue, 2 May 2006
[ 21:30 garga ] Original commit 
1.82 biology/Makefile
1.1 biology/p5-bioperl-run/Makefile
1.1 biology/p5-bioperl-run/distinfo
1.1 biology/p5-bioperl-run/pkg-descr
1.1 biology/p5-bioperl-run/pkg-plist
Bioperl-run contain modules that provides a PERL interface to various
bioinformatics applications. This allows various applications to be used
with common Bioperl objects.

WWW: http://bioperl.org/

PR:             ports/93674
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>

Number of commits found: 26

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