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I am looking for an LTO tape library. Do you have one to spare?
non port: head/biology/p5-bioperl/Makefile
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Number of commits found: 37

Fri, 21 Feb 2014
[ 13:35 ehaupt ] Original commit 
345397 biology/biojava/Makefile
345397 biology/consed/Makefile
345397 biology/finchtv/Makefile
345397 biology/genpak/Makefile
345397 biology/mummer/Makefile
345397 biology/njplot/Makefile
345397 biology/p5-bioperl-run/Makefile
345397 biology/p5-bioperl/Makefile
345397 biology/paml/Makefile
345397 biology/velvet/Makefile
Remove trailing whitespaces from category biology
Mon, 10 Feb 2014
[ 13:54 ehaupt ] Original commit 
343634 archivers/aolserver-nszlib/Makefile
343634 archivers/dact/Makefile
343634 archivers/freeze/Makefile
343634 archivers/javatar/Makefile
343634 archivers/lha-ac/Makefile
343634 archivers/libpar2/Makefile
343634 archivers/lzo2/Makefile
343634 archivers/makeself/Makefile
343634 archivers/py-lzma/Makefile
343634 archivers/ruby-libarchive/Makefile

(Only the first 10 of 581 ports in this commit are shown above. View all ports for this commit)
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
Fri, 3 Jan 2014
[ 15:46 adamw ] Original commit 
338550 biology/biojava/Makefile
338550 biology/blast/Makefile
338550 biology/consed/Makefile
338550 biology/finchtv/Makefile
338550 biology/mafft/Makefile
338550 biology/mummer/Makefile
338550 biology/njplot/Makefile
338550 biology/p5-bioperl-run/Makefile
338550 biology/p5-bioperl/Makefile
338550 biology/paml/Makefile

(Only the first 10 of 14 ports in this commit are shown above. View all ports for this commit)
Convert biology to MDOCS and MEXAMPLES
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Tue, 6 Aug 2013
[ 08:50 az ] Original commit 
324306 astro/p5-GPS-OID/Makefile
324306 astro/p5-Starlink-AST/Makefile
324306 biology/p5-Bio-SCF/Makefile
324306 biology/p5-bioperl/Makefile
324306 databases/p5-Test-Cukes/Makefile
324306 devel/p5-Exporter-Easy/Makefile
324306 devel/p5-ExtUtils-LibBuilder/Makefile
324306 devel/p5-File-ShareDir-PathClass/Makefile
324306 devel/p5-Find-Lib/Makefile
324306 devel/p5-Import-Into/Makefile

(Only the first 10 of 32 ports in this commit are shown above. View all ports for this commit)
- Convert to new perl framework
- Trim Makefile header

Approved by:	wen@ (maintainer)
Fri, 7 Jun 2013
[ 06:51 az ] Original commit 
320153 biology/p5-bioperl/Makefile
- Avoid of using SITE_PERL
- Remove depend on DB_File.pm since it part of perl distribution

PR:		ports/178877
Submitted by:	az
Approved by:	matainer (timeout)
Mon, 1 Oct 2012
[ 14:55 wen ] Original commit 
305131 biology/blast/Makefile
305131 biology/embassy/Makefile
305131 biology/emboss/Makefile
305131 biology/fasta3/Makefile
305131 biology/hmmer/Makefile
305131 biology/p5-bioperl/Makefile
305131 biology/primer3/Makefile
- Take maintainership
[ 14:45 tabthorpe ] Original commit 
305130 biology/ariadne/Makefile
305130 biology/artemis/Makefile
305130 biology/belvu/Makefile
305130 biology/blast/Makefile
305130 biology/blat/Makefile
305130 biology/dotter/Makefile
305130 biology/embassy/Makefile
305130 biology/emboss/Makefile
305130 biology/fasta3/Makefile
305130 biology/finchtv/Makefile

(Only the first 10 of 47 ports in this commit are shown above. View all ports for this commit)
- Reassign to the heap at maintainer's request
Sat, 30 Jun 2012
[ 05:21 az ] Original commit 
1.29 biology/p5-bioperl/Makefile
1.29 devel/autodia/Makefile
1.9 devel/p5-Class-AutoClass/Makefile
1.8 devel/p5-Data-Stag/Makefile
1.8 graphics/p5-GD-Graph-histogram/Makefile
1.15 graphics/p5-GD-SVG/Makefile
1.10 graphics/p5-SpringGraph/Makefile
1.3 math/p5-Math-Spline/Makefile
1.7 www/p5-CGI-FormBuilder/Makefile
1.8 www/p5-Catalyst-Controller-BindLex/Makefile
- Remove SITE_PERL from *_DEPENDS

Approved by: portmgr@ (bapt@)
Fri, 1 Jun 2012
[ 05:26 dinoex ] Original commit 
1.59 Mk/bsd.gecko.mk
1.1246 UPDATING
1.18 accessibility/accerciser/Makefile
1.12 accessibility/at-poke/Makefile
1.77 accessibility/at-spi/Makefile
1.5 accessibility/at-spi2-atk/Makefile
1.54 accessibility/dasher/Makefile
1.60 accessibility/gnome-mag/Makefile
1.45 accessibility/gnopernicus/Makefile
1.51 accessibility/gok/Makefile

(Only the first 10 of 4371 ports in this commit are shown above. View all ports for this commit)
- update png to 1.5.10
Sat, 21 Jan 2012
[ 17:40 eadler ] Original commit 
1.13 astro/p5-Astro-Catalog/Makefile
1.11 astro/p5-Astro-SunTime/Makefile
1.7 astro/py-RO/Makefile
1.10 astro/py-aipy/Makefile
1.3 astro/py-pyfits/Makefile
1.8 audio/calf/Makefile
1.30 audio/gnupod/Makefile
1.3 audio/jack_mixer/Makefile
1.61 audio/muine/Makefile
1.8 audio/p5-Audio-Scrobbler/Makefile

(Only the first 10 of 1326 ports in this commit are shown above. View all ports for this commit)
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
Sun, 28 Mar 2010
[ 06:47 dinoex ] Original commit 
1.20 Mk/bsd.gecko.mk
1.12 accessibility/accerciser/Makefile
1.10 accessibility/at-poke/Makefile
1.72 accessibility/at-spi/Makefile
1.51 accessibility/dasher/Makefile
1.54 accessibility/gnome-mag/Makefile
1.42 accessibility/gnopernicus/Makefile
1.46 accessibility/gok/Makefile
1.11 accessibility/java-access-bridge/Makefile
1.32 accessibility/kdeaccessibility/Makefile

(Only the first 10 of 4470 ports in this commit are shown above. View all ports for this commit)
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
Fri, 5 Feb 2010
[ 11:46 dinoex ] Original commit 
1.19 Mk/bsd.gecko.mk
1.11 accessibility/accerciser/Makefile
1.9 accessibility/at-poke/Makefile
1.71 accessibility/at-spi/Makefile
1.50 accessibility/dasher/Makefile
1.53 accessibility/gnome-mag/Makefile
1.41 accessibility/gnopernicus/Makefile
1.45 accessibility/gok/Makefile
1.10 accessibility/java-access-bridge/Makefile
1.31 accessibility/kdeaccessibility/Makefile

(Only the first 10 of 4271 ports in this commit are shown above. View all ports for this commit)
- update to jpeg-8
Fri, 29 Jan 2010
[ 14:52 kuriyama ] Original commit 
1.2 astro/p5-Astro-SIMBAD-Client/Makefile
1.27 audio/gnupod/Makefile
1.5 audio/p5-Audio-Scrobbler/Makefile
1.7 audio/p5-Net-DAAP-Client/Makefile
1.8 audio/p5-Net-FreeDB/Makefile
1.17 audio/p5-Xmms/Makefile
1.66 audio/squeezeboxserver/Makefile
1.26 biology/p5-AcePerl/Makefile
1.2 biology/p5-Bio-Glite/Makefile
1.14 biology/p5-Bio-Graphics/Makefile

(Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
- Remove unneeded dependencies which is in perl-5.8.9 dist
  (part 19; last!).

Approved by:    portmgr (itetcu)
Fri, 4 Dec 2009
[ 11:50 wen ] Original commit 
1.23 biology/p5-bioperl/Makefile
1.10 biology/p5-bioperl/distinfo
1.1 biology/p5-bioperl/files/patch-Bio-Root-Build.pm
1.2 biology/p5-bioperl/files/patch-Build.PL
1.2 biology/p5-bioperl/files/patch-Build.pm
1.10 biology/p5-bioperl/pkg-plist
- Update to 1.6.1

Approved by:    maintainer (via Email)
Fri, 31 Jul 2009
[ 13:57 dinoex ] Original commit 
1.9 accessibility/accerciser/Makefile
1.8 accessibility/at-poke/Makefile
1.69 accessibility/at-spi/Makefile
1.49 accessibility/dasher/Makefile
1.40 accessibility/gnopernicus/Makefile
1.43 accessibility/gok/Makefile
1.8 accessibility/java-access-bridge/Makefile
1.29 accessibility/kdeaccessibility/Makefile
1.35 accessibility/kdeaccessibility4/Makefile
1.11 accessibility/mousetweaks/Makefile

(Only the first 10 of 3009 ports in this commit are shown above. View all ports for this commit)
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
Wed, 22 Jul 2009
[ 16:27 pgollucci ] Original commit 
1.61 archivers/p5-Compress-Zlib/Makefile
1.18 archivers/p5-IO-Compress-Base/Makefile
1.12 archivers/p5-IO-Zlib/Makefile
1.8 audio/p5-Audio-WMA/Makefile
1.3 audio/p5-MP3-Find/Makefile
1.20 audio/pacpl/Makefile
1.4 benchmarks/p5-Benchmark-Stopwatch/Makefile
1.15 biology/p5-Bio-Das/Makefile
1.21 biology/p5-bioperl/Makefile
1.8 converters/convmv/Makefile

(Only the first 10 of 263 ports in this commit are shown above. View all ports for this commit)
- lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks

PR:             ports/135398
Tested by:      2 -exp runs by pav
Approved by:    portmgr (pav)
Thu, 5 Mar 2009
[ 17:56 skv ] Original commit 
1.12 Mk/bsd.perl.mk
1.612 Mk/bsd.port.mk
1.20 biology/p5-bioperl/Makefile
1.10 japanese/jcode.pl/Makefile
1.14 japanese/p5-jcode.pl/Makefile
1.77 lang/perl5.6/Makefile
1.9 lang/perl5.6/files/use.perl
1.103 lang/perl5.8/Makefile
1.12 lang/perl5.8/files/use.perl
1.2 sysutils/logwatch/Makefile

(Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
Remove variable PERL_VER from the ports tree at all - because
it is obsolete since Perl 5.6.0.
Mon, 23 Feb 2009
[ 19:31 garga ] Original commit 
1.19 biology/p5-bioperl/Makefile
1.9 biology/p5-bioperl/distinfo
1.1 biology/p5-bioperl/files/patch-Build.PL
1.1 biology/p5-bioperl/files/patch-Build.pm
1.2 biology/p5-bioperl/files/patch-manify
1.9 biology/p5-bioperl/pkg-plist
- Update to 1.6.0

PR:             ports/131989
Submitted by:   maintainer
Wed, 14 Jan 2009
[ 14:51 tobez ] Original commit 
1.18 biology/p5-bioperl/Makefile
Fix plist with perl 5.8.9.

Approved by:    portmgr (pav, implicit)
Thu, 17 Apr 2008
[ 14:30 araujo ] Original commit 
1.9 archivers/p5-Archive-Extract/Makefile
1.8 archivers/p5-Compress-Bzip2/Makefile
1.5 archivers/p5-Compress-LZW/Makefile
1.5 archivers/p5-PerlIO-gzip/Makefile
1.3 archivers/p5-PerlIO-via-Bzip2/Makefile
1.12 astro/p5-Astro-Catalog/Makefile
1.10 astro/p5-Astro-MoonPhase/Makefile
1.6 astro/p5-Astro-Sunrise/Makefile
1.8 astro/p5-GPS/Makefile
1.3 audio/p5-Audio-Beep/Makefile

(Only the first 10 of 2168 ports in this commit are shown above. View all ports for this commit)
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)
Sat, 8 Sep 2007
[ 00:53 linimon ] Original commit 
1.2 benchmarks/p5-Benchmark-Stopwatch/Makefile
1.17 biology/p5-AcePerl/Makefile
1.2 biology/p5-Bio-ASN1-EntrezGene/Makefile
1.7 biology/p5-Bio-Phylo/Makefile
1.11 biology/p5-bioperl-devel/Makefile
1.3 biology/p5-bioperl-run-devel/Makefile
1.3 biology/p5-bioperl-run/Makefile
1.16 biology/p5-bioperl/Makefile
1.2 cad/p5-GDS2/Makefile
1.13 chinese/oicq/Makefile

(Only the first 10 of 30 ports in this commit are shown above. View all ports for this commit)
Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr
Sat, 19 May 2007
[ 20:32 flz ] Original commit 
1.1364 MOVED
1.566 Mk/bsd.port.mk
1.1 Mk/bsd.xorg.mk
1.1 Tools/scripts/mergebase.sh
1.502 UPDATING
1.2 accessibility/at-poke/Makefile
1.60 accessibility/at-spi/Makefile
1.29 accessibility/at-spi/pkg-plist
1.51 accessibility/atk/Makefile
1.27 accessibility/atk/pkg-plist

(Only the first 10 of 7868 ports in this commit are shown above. View all ports for this commit)
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
Sun, 4 Dec 2005
[ 22:11 edwin ] Original commit 
1.14 biology/p5-bioperl/Makefile
Add conflicst:
CONFLICTS=     p5-bioperl-1.[13579]*

Submitted by:   Mauricio Herrera Cuadra <arareko@yahoo.com>,Fernan Aguero
<fernan@iib.unsam.edu.ar>
Fri, 3 Sep 2004
[ 17:04 leeym ] Original commit 
1.13 biology/p5-bioperl/Makefile
1.8 biology/p5-bioperl/pkg-plist
- add missing MAN1 and MAN3
- apply DATADIR, EXAMPLESDIR, and DOCSDIR in PLIST
- update the usage of NOPORTDOCS

PR:             71322
Submitted by:   leeym
Approved by:    Fernan Aguero <fernan@iib.unsam.edu.ar>
Thu, 12 Aug 2004
[ 12:48 mat ] Original commit 
1.12 biology/p5-bioperl/Makefile
1.12 databases/p5-Class-DBI/Makefile
1.6 devel/cvsmonitor/Makefile
1.7 devel/p5-Data-TemporaryBag/Makefile
1.5 devel/p5-File-Flat/Makefile
1.2 devel/p5-File-Modified/Makefile
1.4 devel/p5-Log-Dispatch-Config/Makefile
1.8 devel/p5-PAR/Makefile
1.4 devel/p5-PatchReader/Makefile
1.3 devel/p5-Test-Reporter/Makefile

(Only the first 10 of 27 ports in this commit are shown above. View all ports for this commit)
After devel/p5-File-Temp has gained an IGNORE for PERL_LEVEL > 500800, all
these ports were broken because they always depended on it. I've rearranged all
the dependencies to fit the new scheme.
Mon, 8 Mar 2004
[ 03:29 linimon ] Original commit 
1.11 biology/p5-bioperl/Makefile
Unmark as broken for 4.x; instead, mark as ignore for perl < 5.6.
Sun, 22 Feb 2004
[ 00:06 kris ] Original commit 
1.10 biology/p5-bioperl/Makefile
BROKEN on 4.x: Configure fails
Wed, 21 Jan 2004
[ 08:34 linimon ] Original commit 
1.9 biology/p5-bioperl/Makefile
1.6 biology/p5-bioperl/distinfo
1.2 biology/p5-bioperl/files/ext.msg
1.2 biology/p5-bioperl/files/patch-aa
1.1 biology/p5-bioperl/files/patch-manify
1.7 biology/p5-bioperl/pkg-plist
Major update from 0.7.2 to 1.4 by new maintainer.  This is almost a complete
rework of the port.

See the page http://news.open-bio.org/archives/cat_bioperl.html for the
changes between 1.2 and 1.4.  The older changes are in the CVS tree.

From the new maintainer:

        Note that this new port just handles the installation of bioperl and
        not of additional extra stuff (bioperl-gui, bioperl-corba-server,
        bioperl-corba-client). This is unlike the behaviour of the current
        port.

        The extra stuff, though still functional, had very little adoption
        among users, and does not appear to be currently supported/maintained.

PR:             ports/47303 (and subsequent)
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer)
Fri, 24 Oct 2003
[ 12:05 ijliao ] Original commit 
1.16 archivers/p5-Archive-Zip/Makefile
1.5 archivers/p5-Archive-Zip/pkg-plist
1.3 archivers/p5-IO-Zlib/Makefile
1.2 archivers/p5-IO-Zlib/pkg-plist
1.7 archivers/p5-Mac-Macbinary/Makefile
1.3 archivers/p5-Mac-Macbinary/pkg-plist
1.6 astro/p5-Astro-MoonPhase/Makefile
1.3 astro/p5-Astro-MoonPhase/pkg-plist
1.3 astro/p5-Astro-SunTime/pkg-plist
1.4 astro/p5-Astro-Sunrise/pkg-plist

(Only the first 10 of 1501 ports in this commit are shown above. View all ports for this commit)
utilize SITE_PERL

PR:             58166
Submitted by:   Cheng-Lung Sung <clsung@dragon2.net>
Fri, 7 Mar 2003
[ 05:56 ade ] Original commit 
1.2 biology/coalesce/Makefile
1.2 biology/coalesce/pkg-comment
1.31 biology/emboss/Makefile
1.2 biology/emboss/pkg-comment
1.4 biology/fasta/Makefile
1.2 biology/fasta/pkg-comment
1.8 biology/fasta3/Makefile
1.3 biology/fasta3/pkg-comment
1.2 biology/fluctuate/Makefile
1.2 biology/fluctuate/pkg-comment

(Only the first 10 of 28 ports in this commit are shown above. View all ports for this commit)
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
Fri, 25 Jan 2002
[ 11:46 wjv ]  
unknown biology/p5-bioperl/Makefile
unknown biology/p5-bioperl/distinfo
- Update to version 0.7.2, somewhat overdue.  :-)    
Mon, 13 Aug 2001
[ 11:26 wjv ]  
unknown biology/p5-bioperl/Makefile
unknown biology/p5-bioperl/pkg-descr
unknown biology/p5-bioperl/pkg-plist
- Properly list run-time dependencies in RUN_DEPENDS in Makefile.   - Deploy
%%PERL_VER%% and %%PERL_ARCH%% pragmas consistently throughout     pkg-plist. 
(Ouch, that was embarrassing.)   - Bump PORTREVISION due to the above.   -
Update my email address and the project's URL in pkg-descr.    
Wed, 4 Jul 2001
[ 14:22 wjv ]  
unknown biology/p5-bioperl/Makefile
unknown biology/p5-bioperl/distinfo
unknown biology/p5-bioperl/files/ext.msg
unknown biology/p5-bioperl/pkg-plist
- Update to version 0.7.1   - Add a build-time message to inform the user of
available options.    
Tue, 26 Jun 2001
[ 16:09 wjv ]  
unknown biology/p5-bioperl/Makefile
unknown biology/p5-bioperl/distinfo
unknown biology/p5-bioperl/pkg-plist
Embarrassingly long overdue update to 0.7.0, including optional support for  
GUI (Tk) and CORBA extensions.    
Fri, 13 Oct 2000
[ 13:43 jeh ]  
unknown biology/p5-bioperl/Makefile
unknown biology/p5-bioperl/distinfo
unknown biology/p5-bioperl/pkg-plist
Update to version 0.6.2    
Fri, 28 Jul 2000
[ 15:06 nbm ]  
unknown biology/p5-bioperl/Makefile
unknown biology/p5-bioperl/files/md5
unknown biology/p5-bioperl/patches/patch-aa
unknown biology/p5-bioperl/pkg/COMMENT
unknown biology/p5-bioperl/pkg/DESCR
unknown biology/p5-bioperl/pkg/PLIST
Add BioPerl, a collection of Perl5 mods for bioinformatics/genomics    

Number of commits found: 37

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