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Port details
pbseqan Pacific Biosciences patched and stripped down SeqAn
g20171011 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout g20171011Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Upstream merged into SeqAn project: Use biology/seqan
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-04-21 17:21:58
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
License: BSD3CLAUSE
WWW:
https://github.com/PacificBiosciences/seqan
Description:
This is a public fork of the SeqAn Library v2.0.0, stripped down to just the header files and with a few custom fixes. Some of PacBio's tools depend on SeqAn for efficient implementations of some common data-structures for sequence analysis (A huge thanks to SeqAn development team!). However PacBio only uses a small amount of the SeqAn code-base, and in addition requires a few minor fixes that didn't make it in to the initial release of SeqAn v2.0.0. Thus to minimize confusion and band-width, we will depend on this fork instead of SeqAn proper.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
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  1. /usr/local/share/licenses/pbseqan-g20171011/catalog.mk
  2. /usr/local/share/licenses/pbseqan-g20171011/LICENSE
  3. /usr/local/share/licenses/pbseqan-g20171011/BSD3CLAUSE
  4. include/PacBio/seqan/LICENSE
  5. include/PacBio/seqan/align.h
  6. include/PacBio/seqan/align/align_base.h
  7. include/PacBio/seqan/align/align_cols.h
  8. include/PacBio/seqan/align/align_config.h
  9. include/PacBio/seqan/align/align_iterator_base.h
  10. include/PacBio/seqan/align/align_metafunctions.h
  11. include/PacBio/seqan/align/align_traceback.h
  12. include/PacBio/seqan/align/alignment_algorithm_tags.h
  13. include/PacBio/seqan/align/alignment_operations.h
  14. include/PacBio/seqan/align/dp_algorithm_impl.h
  15. include/PacBio/seqan/align/dp_band.h
  16. include/PacBio/seqan/align/dp_cell.h
  17. include/PacBio/seqan/align/dp_cell_affine.h
  18. include/PacBio/seqan/align/dp_cell_dynamic.h
  19. include/PacBio/seqan/align/dp_cell_linear.h
  20. include/PacBio/seqan/align/dp_context.h
  21. include/PacBio/seqan/align/dp_formula.h
  22. include/PacBio/seqan/align/dp_formula_affine.h
  23. include/PacBio/seqan/align/dp_formula_dynamic.h
  24. include/PacBio/seqan/align/dp_formula_linear.h
  25. include/PacBio/seqan/align/dp_matrix.h
  26. include/PacBio/seqan/align/dp_matrix_navigator.h
  27. include/PacBio/seqan/align/dp_matrix_navigator_score_matrix.h
  28. include/PacBio/seqan/align/dp_matrix_navigator_score_matrix_sparse.h
  29. include/PacBio/seqan/align/dp_matrix_navigator_trace_matrix.h
  30. include/PacBio/seqan/align/dp_matrix_sparse.h
  31. include/PacBio/seqan/align/dp_meta_info.h
  32. include/PacBio/seqan/align/dp_profile.h
  33. include/PacBio/seqan/align/dp_scout.h
  34. include/PacBio/seqan/align/dp_setup.h
  35. include/PacBio/seqan/align/dp_trace_segment.h
  36. include/PacBio/seqan/align/dp_traceback_adaptor.h
  37. include/PacBio/seqan/align/dp_traceback_impl.h
  38. include/PacBio/seqan/align/evaluate_alignment.h
  39. include/PacBio/seqan/align/fragment.h
  40. include/PacBio/seqan/align/gap_anchor.h
  41. include/PacBio/seqan/align/gapped_value_type.h
  42. include/PacBio/seqan/align/gaps_anchor.h
  43. include/PacBio/seqan/align/gaps_array.h
  44. include/PacBio/seqan/align/gaps_base.h
  45. include/PacBio/seqan/align/gaps_iterator_anchor.h
  46. include/PacBio/seqan/align/gaps_iterator_array.h
  47. include/PacBio/seqan/align/gaps_iterator_base.h
  48. include/PacBio/seqan/align/global_alignment_banded.h
  49. include/PacBio/seqan/align/global_alignment_hirschberg_impl.h
  50. include/PacBio/seqan/align/global_alignment_myers_hirschberg_impl.h
  51. include/PacBio/seqan/align/global_alignment_myers_impl.h
  52. include/PacBio/seqan/align/global_alignment_specialized.h
  53. include/PacBio/seqan/align/global_alignment_unbanded.h
  54. include/PacBio/seqan/align/local_alignment_banded.h
  55. include/PacBio/seqan/align/local_alignment_banded_waterman_eggert_impl.h
  56. include/PacBio/seqan/align/local_alignment_enumeration.h
  57. include/PacBio/seqan/align/local_alignment_enumeration_banded.h
  58. include/PacBio/seqan/align/local_alignment_enumeration_unbanded.h
  59. include/PacBio/seqan/align/local_alignment_unbanded.h
  60. include/PacBio/seqan/align/local_alignment_waterman_eggert_impl.h
  61. include/PacBio/seqan/align/matrix_base.h
  62. include/PacBio/seqan/align_extend.h
  63. include/PacBio/seqan/align_extend/align_extend.h
  64. include/PacBio/seqan/align_extend/align_extend_base.h
  65. include/PacBio/seqan/align_extend/dp_scout_xdrop.h
  66. include/PacBio/seqan/align_profile.h
  67. include/PacBio/seqan/align_profile/add_to_profile.h
  68. include/PacBio/seqan/align_profile/score_profile_seq.h
  69. include/PacBio/seqan/align_split.h
  70. include/PacBio/seqan/align_split/align_split_interface.h
  71. include/PacBio/seqan/align_split/dp_scout_split.h
  72. include/PacBio/seqan/alignment_free.h
  73. include/PacBio/seqan/alignment_free/af_d2.h
  74. include/PacBio/seqan/alignment_free/af_d2star.h
  75. include/PacBio/seqan/alignment_free/af_d2z.h
  76. include/PacBio/seqan/alignment_free/af_n2.h
  77. include/PacBio/seqan/alignment_free/alignment_free_base.h
  78. include/PacBio/seqan/alignment_free/alignment_free_comparison.h
  79. include/PacBio/seqan/alignment_free/kmer_functions.h
  80. include/PacBio/seqan/arg_parse.h
  81. include/PacBio/seqan/arg_parse/arg_parse_argument.h
  82. include/PacBio/seqan/arg_parse/arg_parse_ctd_support.h
  83. include/PacBio/seqan/arg_parse/arg_parse_doc.h
  84. include/PacBio/seqan/arg_parse/arg_parse_exceptions.h
  85. include/PacBio/seqan/arg_parse/arg_parse_option.h
  86. include/PacBio/seqan/arg_parse/arg_parse_parse.h
  87. include/PacBio/seqan/arg_parse/arg_parse_type_support.h
  88. include/PacBio/seqan/arg_parse/argument_parser.h
  89. include/PacBio/seqan/arg_parse/tool_doc.h
  90. include/PacBio/seqan/arg_parse/xml_support.h
  91. include/PacBio/seqan/bam_io.h
  92. include/PacBio/seqan/bam_io/bam_alignment_record.h
  93. include/PacBio/seqan/bam_io/bam_alignment_record_util.h
  94. include/PacBio/seqan/bam_io/bam_file.h
  95. include/PacBio/seqan/bam_io/bam_header_record.h
  96. include/PacBio/seqan/bam_io/bam_index_bai.h
  97. include/PacBio/seqan/bam_io/bam_io_context.h
  98. include/PacBio/seqan/bam_io/bam_sam_conversion.h
  99. include/PacBio/seqan/bam_io/bam_scanner_cache.h
  100. include/PacBio/seqan/bam_io/bam_tags_dict.h
  101. include/PacBio/seqan/bam_io/cigar.h
  102. include/PacBio/seqan/bam_io/read_bam.h
  103. include/PacBio/seqan/bam_io/read_sam.h
  104. include/PacBio/seqan/bam_io/write_bam.h
  105. include/PacBio/seqan/bam_io/write_sam.h
  106. include/PacBio/seqan/basic.h
  107. include/PacBio/seqan/basic/aggregate_concept.h
  108. include/PacBio/seqan/basic/allocator_chunkpool.h
  109. include/PacBio/seqan/basic/allocator_interface.h
  110. include/PacBio/seqan/basic/allocator_multipool.h
  111. include/PacBio/seqan/basic/allocator_simple.h
  112. include/PacBio/seqan/basic/allocator_singlepool.h
  113. include/PacBio/seqan/basic/allocator_to_std.h
  114. include/PacBio/seqan/basic/alphabet_adapt_builtins.h
  115. include/PacBio/seqan/basic/alphabet_bio.h
  116. include/PacBio/seqan/basic/alphabet_concept.h
  117. include/PacBio/seqan/basic/alphabet_math.h
  118. include/PacBio/seqan/basic/alphabet_profile.h
  119. include/PacBio/seqan/basic/alphabet_qualities.h
  120. include/PacBio/seqan/basic/alphabet_residue.h
  121. include/PacBio/seqan/basic/alphabet_residue_funcs.h
  122. include/PacBio/seqan/basic/alphabet_residue_tabs.h
  123. include/PacBio/seqan/basic/alphabet_simple_type.h
  124. include/PacBio/seqan/basic/alphabet_storage.h
  125. include/PacBio/seqan/basic/array_construct_destruct.h
  126. include/PacBio/seqan/basic/basic_aggregate.h
  127. include/PacBio/seqan/basic/basic_allocator.h
  128. include/PacBio/seqan/basic/basic_alphabet.h
  129. include/PacBio/seqan/basic/basic_concept.h
  130. include/PacBio/seqan/basic/basic_container.h
  131. include/PacBio/seqan/basic/basic_debug.h
  132. include/PacBio/seqan/basic/basic_device.h
  133. include/PacBio/seqan/basic/basic_exception.h
  134. include/PacBio/seqan/basic/basic_functors.h
  135. include/PacBio/seqan/basic/basic_fundamental.h
  136. include/PacBio/seqan/basic/basic_iterator.h
  137. include/PacBio/seqan/basic/basic_math.h
  138. include/PacBio/seqan/basic/basic_metaprogramming.h
  139. include/PacBio/seqan/basic/basic_parallelism.h
  140. include/PacBio/seqan/basic/basic_proxy.h
  141. include/PacBio/seqan/basic/basic_simd_vector.h
  142. include/PacBio/seqan/basic/basic_smart_pointer.h
  143. include/PacBio/seqan/basic/basic_stream.h
  144. include/PacBio/seqan/basic/basic_tangle.h
  145. include/PacBio/seqan/basic/basic_type.h
  146. include/PacBio/seqan/basic/basic_view.h
  147. include/PacBio/seqan/basic/boost_preprocessor_subset.h
  148. include/PacBio/seqan/basic/builtin_functions.h
  149. include/PacBio/seqan/basic/concept_checking.h
  150. include/PacBio/seqan/basic/container_concept.h
  151. include/PacBio/seqan/basic/debug_helper.h
  152. include/PacBio/seqan/basic/debug_test_system.h
  153. include/PacBio/seqan/basic/fundamental_chunking.h
  154. include/PacBio/seqan/basic/fundamental_comparison.h
  155. include/PacBio/seqan/basic/fundamental_concepts.h
  156. include/PacBio/seqan/basic/fundamental_conversion.h
  157. include/PacBio/seqan/basic/fundamental_metafunctions.h
  158. include/PacBio/seqan/basic/fundamental_tags.h
  159. include/PacBio/seqan/basic/fundamental_transport.h
  160. include/PacBio/seqan/basic/holder_base.h
  161. include/PacBio/seqan/basic/holder_simple.h
  162. include/PacBio/seqan/basic/holder_tristate.h
  163. include/PacBio/seqan/basic/hosted_type_interface.h
  164. include/PacBio/seqan/basic/iterator_adapt_pointer.h
  165. include/PacBio/seqan/basic/iterator_adapt_std.h
  166. include/PacBio/seqan/basic/iterator_adaptor.h
  167. include/PacBio/seqan/basic/iterator_base.h
  168. include/PacBio/seqan/basic/iterator_concept.h
  169. include/PacBio/seqan/basic/iterator_counting.h
  170. include/PacBio/seqan/basic/iterator_interface.h
  171. include/PacBio/seqan/basic/iterator_position.h
  172. include/PacBio/seqan/basic/iterator_range.h
  173. include/PacBio/seqan/basic/macro_deprecated.h
  174. include/PacBio/seqan/basic/math_functions.h
  175. include/PacBio/seqan/basic/math_log_space_value.h
  176. include/PacBio/seqan/basic/metaprogramming_control.h
  177. include/PacBio/seqan/basic/metaprogramming_enable_if.h
  178. include/PacBio/seqan/basic/metaprogramming_logic.h
  179. include/PacBio/seqan/basic/metaprogramming_math.h
  180. include/PacBio/seqan/basic/metaprogramming_type.h
  181. include/PacBio/seqan/basic/metaprogramming_type_algebra.h
  182. include/PacBio/seqan/basic/pair_base.h
  183. include/PacBio/seqan/basic/pair_bit_compressed.h
  184. include/PacBio/seqan/basic/pair_packed.h
  185. include/PacBio/seqan/basic/profiling.h
  186. include/PacBio/seqan/basic/property_map_concept.h
  187. include/PacBio/seqan/basic/proxy_base.h
  188. include/PacBio/seqan/basic/proxy_iterator.h
  189. include/PacBio/seqan/basic/test_system.h
  190. include/PacBio/seqan/basic/triple_base.h
  191. include/PacBio/seqan/basic/triple_packed.h
  192. include/PacBio/seqan/basic/tuple_base.h
  193. include/PacBio/seqan/basic/tuple_bit_compressed.h
  194. include/PacBio/seqan/basic/volatile_ptr.h
  195. include/PacBio/seqan/bed_io.h
  196. include/PacBio/seqan/bed_io/bed_file.h
  197. include/PacBio/seqan/bed_io/bed_record.h
  198. include/PacBio/seqan/bed_io/read_bed.h
  199. include/PacBio/seqan/bed_io/write_bed.h
  200. include/PacBio/seqan/consensus.h
  201. include/PacBio/seqan/consensus/consensus_aligner.h
  202. include/PacBio/seqan/consensus/consensus_aligner_interface.h
  203. include/PacBio/seqan/consensus/consensus_alignment_options.h
  204. include/PacBio/seqan/consensus/consensus_base.h
  205. include/PacBio/seqan/consensus/consensus_builder.h
  206. include/PacBio/seqan/consensus/consensus_library.h
  207. include/PacBio/seqan/consensus/consensus_realign.h
  208. include/PacBio/seqan/consensus/consensus_score.h
  209. include/PacBio/seqan/consensus/overlap_info_computation.h
  210. include/PacBio/seqan/consensus/overlapper.h
  211. include/PacBio/seqan/file.h
  212. include/PacBio/seqan/file/file_base.h
  213. include/PacBio/seqan/file/file_cstyle.h
  214. include/PacBio/seqan/file/file_forwards.h
  215. include/PacBio/seqan/file/file_interface.h
  216. include/PacBio/seqan/file/file_mapping.h
  217. include/PacBio/seqan/file/file_page.h
  218. include/PacBio/seqan/file/string_external.h
  219. include/PacBio/seqan/file/string_mmap.h
  220. include/PacBio/seqan/find.h
  221. include/PacBio/seqan/find/find_abndm.h
  222. include/PacBio/seqan/find/find_ahocorasick.h
  223. include/PacBio/seqan/find/find_base.h
  224. include/PacBio/seqan/find/find_begin.h
  225. include/PacBio/seqan/find/find_bndm.h
  226. include/PacBio/seqan/find/find_bom.h
  227. include/PacBio/seqan/find/find_hamming_simple.h
  228. include/PacBio/seqan/find/find_horspool.h
  229. include/PacBio/seqan/find/find_lambda.h
  230. include/PacBio/seqan/find/find_multi.h
  231. include/PacBio/seqan/find/find_multiple_bfam.h
  232. include/PacBio/seqan/find/find_multiple_shiftand.h
  233. include/PacBio/seqan/find/find_myers_ukkonen.h
  234. include/PacBio/seqan/find/find_pattern_base.h
  235. include/PacBio/seqan/find/find_pex.h
  236. include/PacBio/seqan/find/find_score.h
  237. include/PacBio/seqan/find/find_set_horspool.h
  238. include/PacBio/seqan/find/find_shiftand.h
  239. include/PacBio/seqan/find/find_shiftor.h
  240. include/PacBio/seqan/find/find_simple.h
  241. include/PacBio/seqan/find/find_wild_shiftand.h
  242. include/PacBio/seqan/find/find_wumanber.h
  243. include/PacBio/seqan/gff_io.h
  244. include/PacBio/seqan/gff_io/gff_file.h
  245. include/PacBio/seqan/gff_io/gff_io_base.h
  246. include/PacBio/seqan/graph_algorithms.h
  247. include/PacBio/seqan/graph_algorithms/all_pairs_shortest_path.h
  248. include/PacBio/seqan/graph_algorithms/bellman_ford.h
  249. include/PacBio/seqan/graph_algorithms/bipartite_matching.h
  250. include/PacBio/seqan/graph_algorithms/breadth_first_search.h
  251. include/PacBio/seqan/graph_algorithms/connected_components.h
  252. include/PacBio/seqan/graph_algorithms/depth_first_search.h
  253. include/PacBio/seqan/graph_algorithms/dijkstra.h
  254. include/PacBio/seqan/graph_algorithms/floyd_warshall.h
  255. include/PacBio/seqan/graph_algorithms/ford_fulkerson.h
  256. include/PacBio/seqan/graph_algorithms/graph_algorithm_heap_tree.h
  257. include/PacBio/seqan/graph_algorithms/graph_algorithm_hmm.h
  258. include/PacBio/seqan/graph_algorithms/graph_algorithm_lis_his.h
  259. include/PacBio/seqan/graph_algorithms/kruskal.h
  260. include/PacBio/seqan/graph_algorithms/path_growing.h
  261. include/PacBio/seqan/graph_algorithms/prim.h
  262. include/PacBio/seqan/graph_algorithms/single_source_shortest_path.h
  263. include/PacBio/seqan/graph_algorithms/strongly_connected_compnents.h
  264. include/PacBio/seqan/graph_algorithms/topological_sort.h
  265. include/PacBio/seqan/graph_algorithms/transitive_closure.h
  266. include/PacBio/seqan/graph_algorithms/weakly_connected_components.h
  267. include/PacBio/seqan/graph_algorithms/weighted_bipartite_matching.h
  268. include/PacBio/seqan/graph_align.h
  269. include/PacBio/seqan/graph_align/graph_algorithm_refine_align.h
  270. include/PacBio/seqan/graph_align/graph_algorithm_refine_aligngraph.h
  271. include/PacBio/seqan/graph_align/graph_algorithm_refine_annotation.h
  272. include/PacBio/seqan/graph_align/graph_algorithm_refine_exact.h
  273. include/PacBio/seqan/graph_align/graph_algorithm_refine_exact_iterative.h
  274. include/PacBio/seqan/graph_align/graph_algorithm_refine_fragment.h
  275. include/PacBio/seqan/graph_align/graph_algorithm_refine_inexact.h
  276. include/PacBio/seqan/graph_align/graph_algorithm_refine_scoring.h
  277. include/PacBio/seqan/graph_align/graph_impl_align.h
  278. include/PacBio/seqan/graph_align/graph_impl_align_adapt.h
  279. include/PacBio/seqan/graph_msa.h
  280. include/PacBio/seqan/graph_msa/graph_align_tcoffee_base.h
  281. include/PacBio/seqan/graph_msa/graph_align_tcoffee_distance.h
  282. include/PacBio/seqan/graph_msa/graph_align_tcoffee_guidetree.h
  283. include/PacBio/seqan/graph_msa/graph_align_tcoffee_io.h
  284. include/PacBio/seqan/graph_msa/graph_align_tcoffee_kmer.h
  285. include/PacBio/seqan/graph_msa/graph_align_tcoffee_library.h
  286. include/PacBio/seqan/graph_msa/graph_align_tcoffee_msa.h
  287. include/PacBio/seqan/graph_msa/graph_align_tcoffee_progressive.h
  288. include/PacBio/seqan/graph_msa/graph_align_tcoffee_refinement.h
  289. include/PacBio/seqan/graph_types.h
  290. include/PacBio/seqan/graph_types/graph_base.h
  291. include/PacBio/seqan/graph_types/graph_drawing.h
  292. include/PacBio/seqan/graph_types/graph_edgestump.h
  293. include/PacBio/seqan/graph_types/graph_idmanager.h
  294. include/PacBio/seqan/graph_types/graph_impl_automaton.h
  295. include/PacBio/seqan/graph_types/graph_impl_directed.h
  296. include/PacBio/seqan/graph_types/graph_impl_hmm.h
  297. include/PacBio/seqan/graph_types/graph_impl_oracle.h
  298. include/PacBio/seqan/graph_types/graph_impl_tree.h
  299. include/PacBio/seqan/graph_types/graph_impl_trie.h
  300. include/PacBio/seqan/graph_types/graph_impl_undirected.h
  301. include/PacBio/seqan/graph_types/graph_impl_wordgraph.h
  302. include/PacBio/seqan/graph_types/graph_interface.h
  303. include/PacBio/seqan/graph_types/graph_iterator.h
  304. include/PacBio/seqan/graph_types/graph_iterator_adjacency.h
  305. include/PacBio/seqan/graph_types/graph_iterator_bfs.h
  306. include/PacBio/seqan/graph_types/graph_iterator_dfs.h
  307. include/PacBio/seqan/graph_types/graph_iterator_edge.h
  308. include/PacBio/seqan/graph_types/graph_iterator_outedge.h
  309. include/PacBio/seqan/graph_types/graph_iterator_vertex.h
  310. include/PacBio/seqan/graph_types/graph_utility_parsing.h
  311. include/PacBio/seqan/graph_types/property_map_generic.h
  312. include/PacBio/seqan/graph_types/property_map_internal.h
  313. include/PacBio/seqan/graph_types/property_map_internal_pointer.h
  314. include/PacBio/seqan/index.h
  315. include/PacBio/seqan/index/find2_backtracking.h
  316. include/PacBio/seqan/index/find2_base.h
  317. include/PacBio/seqan/index/find2_functors.h
  318. include/PacBio/seqan/index/find2_index.h
  319. include/PacBio/seqan/index/find2_index_multi.h
  320. include/PacBio/seqan/index/find2_vstree_factory.h
  321. include/PacBio/seqan/index/find_backtracking.h
  322. include/PacBio/seqan/index/find_index.h
  323. include/PacBio/seqan/index/find_index_approx.h
  324. include/PacBio/seqan/index/find_index_esa.h
  325. include/PacBio/seqan/index/find_index_lambda.h
  326. include/PacBio/seqan/index/find_index_qgram.h
  327. include/PacBio/seqan/index/find_pigeonhole.h
  328. include/PacBio/seqan/index/find_quasar.h
  329. include/PacBio/seqan/index/find_swift.h
  330. include/PacBio/seqan/index/index_base.h
  331. include/PacBio/seqan/index/index_bwt.h
  332. include/PacBio/seqan/index/index_childtab.h
  333. include/PacBio/seqan/index/index_device.h
  334. include/PacBio/seqan/index/index_dfi.h
  335. include/PacBio/seqan/index/index_esa_algs.h
  336. include/PacBio/seqan/index/index_esa_algs_multi.h
  337. include/PacBio/seqan/index/index_esa_base.h
  338. include/PacBio/seqan/index/index_esa_drawing.h
  339. include/PacBio/seqan/index/index_esa_stree.h
  340. include/PacBio/seqan/index/index_fm.h
  341. include/PacBio/seqan/index/index_fm_compressed_sa.h
  342. include/PacBio/seqan/index/index_fm_compressed_sa_iterator.h
  343. include/PacBio/seqan/index/index_fm_device.h
  344. include/PacBio/seqan/index/index_fm_dox.h
  345. include/PacBio/seqan/index/index_fm_lf_table.h
  346. include/PacBio/seqan/index/index_fm_rank_dictionary_base.h
  347. include/PacBio/seqan/index/index_fm_rank_dictionary_levels.h
  348. include/PacBio/seqan/index/index_fm_rank_dictionary_naive.h
  349. include/PacBio/seqan/index/index_fm_rank_dictionary_wt.h
  350. include/PacBio/seqan/index/index_fm_right_array_binary_tree.h
  351. include/PacBio/seqan/index/index_fm_right_array_binary_tree_iterator.h
  352. include/PacBio/seqan/index/index_fm_sparse_string.h
  353. include/PacBio/seqan/index/index_fm_stree.h
  354. include/PacBio/seqan/index/index_forwards.h
  355. include/PacBio/seqan/index/index_lcp.h
  356. include/PacBio/seqan/index/index_lcp_tree.h
  357. include/PacBio/seqan/index/index_pizzachili.h
  358. include/PacBio/seqan/index/index_pizzachili_find.h
  359. include/PacBio/seqan/index/index_pizzachili_string.h
  360. include/PacBio/seqan/index/index_qgram.h
  361. include/PacBio/seqan/index/index_qgram_bucketrefinement.h
  362. include/PacBio/seqan/index/index_qgram_openaddressing.h
  363. include/PacBio/seqan/index/index_qgram_stree.h
  364. include/PacBio/seqan/index/index_sa_btree.h
  365. include/PacBio/seqan/index/index_sa_bwtwalk.h
  366. include/PacBio/seqan/index/index_sa_lss.h
  367. include/PacBio/seqan/index/index_sa_mm.h
  368. include/PacBio/seqan/index/index_sa_qsort.h
  369. include/PacBio/seqan/index/index_sa_stree.h
  370. include/PacBio/seqan/index/index_sa_truncated.h
  371. include/PacBio/seqan/index/index_shawarma.h
  372. include/PacBio/seqan/index/index_shims.h
  373. include/PacBio/seqan/index/index_skew3.h
  374. include/PacBio/seqan/index/index_skew7.h
  375. include/PacBio/seqan/index/index_skew7_multi.h
  376. include/PacBio/seqan/index/index_view.h
  377. include/PacBio/seqan/index/index_wotd.h
  378. include/PacBio/seqan/index/pipe_merger3.h
  379. include/PacBio/seqan/index/pipe_merger7.h
  380. include/PacBio/seqan/index/pizzachili_api.h
  381. include/PacBio/seqan/index/pump_extender3.h
  382. include/PacBio/seqan/index/pump_extender7.h
  383. include/PacBio/seqan/index/pump_lcp_core.h
  384. include/PacBio/seqan/index/pump_separator7.h
  385. include/PacBio/seqan/index/radix.h
  386. include/PacBio/seqan/index/repeat_base.h
  387. include/PacBio/seqan/index/shape_base.h
  388. include/PacBio/seqan/index/shape_gapped.h
  389. include/PacBio/seqan/index/shape_onegapped.h
  390. include/PacBio/seqan/index/shape_predefined.h
  391. include/PacBio/seqan/index/shape_threshold.h
  392. include/PacBio/seqan/journaled_set.h
  393. include/PacBio/seqan/journaled_set/journal_alignment_interface.h
  394. include/PacBio/seqan/journaled_set/journal_alignment_traceback_adaptor.h
  395. include/PacBio/seqan/journaled_set/journaled_set_base.h
  396. include/PacBio/seqan/journaled_set/journaled_set_impl.h
  397. include/PacBio/seqan/journaled_set/journaled_set_join.h
  398. include/PacBio/seqan/journaled_set/journaled_set_join_config.h
  399. include/PacBio/seqan/journaled_set/journaled_set_join_global_align_compact.h
  400. include/PacBio/seqan/journaled_set/journaled_set_join_global_align_manhatten.h
  401. include/PacBio/seqan/journaled_set/journaled_set_journal_trace_descriptor.h
  402. include/PacBio/seqan/journaled_set/score_biaffine.h
  403. include/PacBio/seqan/map.h
  404. include/PacBio/seqan/map/map_adapter_stl.h
  405. include/PacBio/seqan/map/map_base.h
  406. include/PacBio/seqan/map/map_chooser.h
  407. include/PacBio/seqan/map/map_skiplist.h
  408. include/PacBio/seqan/map/map_vector.h
  409. include/PacBio/seqan/map/sumlist.h
  410. include/PacBio/seqan/map/sumlist_mini.h
  411. include/PacBio/seqan/map/sumlist_skip.h
  412. include/PacBio/seqan/math.h
  413. include/PacBio/seqan/math/math_common_factor.h
  414. include/PacBio/seqan/math/math_operators.h
  415. include/PacBio/seqan/math/math_rational.h
  416. include/PacBio/seqan/misc/accumulators.h
  417. include/PacBio/seqan/misc/base.h
  418. include/PacBio/seqan/misc/bit_twiddling.h
  419. include/PacBio/seqan/misc/bit_twiddling_functors.h
  420. include/PacBio/seqan/misc/cuda.h
  421. include/PacBio/seqan/misc/dequeue.h
  422. include/PacBio/seqan/misc/edit_environment.h
  423. include/PacBio/seqan/misc/interval_tree.h
  424. include/PacBio/seqan/misc/map.h
  425. include/PacBio/seqan/misc/memset.h
  426. include/PacBio/seqan/misc/name_store_cache.h
  427. include/PacBio/seqan/misc/priority_type_base.h
  428. include/PacBio/seqan/misc/priority_type_heap.h
  429. include/PacBio/seqan/misc/set.h
  430. include/PacBio/seqan/misc/sse2.h
  431. include/PacBio/seqan/misc/svg.h
  432. include/PacBio/seqan/misc/terminal.h
  433. include/PacBio/seqan/misc/union_find.h
  434. include/PacBio/seqan/modifier.h
  435. include/PacBio/seqan/modifier/cyclic_shape.h
  436. include/PacBio/seqan/modifier/modifier_alphabet.h
  437. include/PacBio/seqan/modifier/modifier_alphabet_expansion.h
  438. include/PacBio/seqan/modifier/modifier_cyclic_shape.h
  439. include/PacBio/seqan/modifier/modifier_functors.h
  440. include/PacBio/seqan/modifier/modifier_iterator.h
  441. include/PacBio/seqan/modifier/modifier_reverse.h
  442. include/PacBio/seqan/modifier/modifier_shortcuts.h
  443. include/PacBio/seqan/modifier/modifier_string.h
  444. include/PacBio/seqan/modifier/modifier_view.h
  445. include/PacBio/seqan/parallel.h
  446. include/PacBio/seqan/parallel/parallel_algorithms.h
  447. include/PacBio/seqan/parallel/parallel_atomic_misc.h
  448. include/PacBio/seqan/parallel/parallel_atomic_primitives.h
  449. include/PacBio/seqan/parallel/parallel_lock.h
  450. include/PacBio/seqan/parallel/parallel_macros.h
  451. include/PacBio/seqan/parallel/parallel_queue.h
  452. include/PacBio/seqan/parallel/parallel_queue_suspendable.h
  453. include/PacBio/seqan/parallel/parallel_resource_pool.h
  454. include/PacBio/seqan/parallel/parallel_sequence.h
  455. include/PacBio/seqan/parallel/parallel_serializer.h
  456. include/PacBio/seqan/parallel/parallel_splitting.h
  457. include/PacBio/seqan/parallel/parallel_tags.h
  458. include/PacBio/seqan/parse_lm.h
  459. include/PacBio/seqan/parse_lm/local_match_store.h
  460. include/PacBio/seqan/parse_lm/parse_blastn_tabular.h
  461. include/PacBio/seqan/parse_lm/parse_lastz_general.h
  462. include/PacBio/seqan/parse_lm/parse_stellar_gff.h
  463. include/PacBio/seqan/pipe.h
  464. include/PacBio/seqan/pipe/pipe_base.h
  465. include/PacBio/seqan/pipe/pipe_caster.h
  466. include/PacBio/seqan/pipe/pipe_counter.h
  467. include/PacBio/seqan/pipe/pipe_echoer.h
  468. include/PacBio/seqan/pipe/pipe_edit_environment.h
  469. include/PacBio/seqan/pipe/pipe_filter.h
  470. include/PacBio/seqan/pipe/pipe_iterator.h
  471. include/PacBio/seqan/pipe/pipe_joiner.h
  472. include/PacBio/seqan/pipe/pipe_namer.h
  473. include/PacBio/seqan/pipe/pipe_sampler.h
  474. include/PacBio/seqan/pipe/pipe_shifter.h
  475. include/PacBio/seqan/pipe/pipe_source.h
  476. include/PacBio/seqan/pipe/pipe_tupler.h
  477. include/PacBio/seqan/pipe/pool_base.h
  478. include/PacBio/seqan/pipe/pool_mapper.h
  479. include/PacBio/seqan/pipe/pool_sorter.h
  480. include/PacBio/seqan/platform.h
  481. include/PacBio/seqan/platform/platform_gcc.h
  482. include/PacBio/seqan/platform/platform_icc.h
  483. include/PacBio/seqan/platform/platform_mingw.h
  484. include/PacBio/seqan/platform/platform_nvcc.h
  485. include/PacBio/seqan/platform/platform_pgi.h
  486. include/PacBio/seqan/platform/platform_solaris.h
  487. include/PacBio/seqan/platform/platform_windows.h
  488. include/PacBio/seqan/platform/windows_stdint.h
  489. include/PacBio/seqan/random.h
  490. include/PacBio/seqan/random/ext_MersenneTwister.h
  491. include/PacBio/seqan/random/random_base.h
  492. include/PacBio/seqan/random/random_beta.h
  493. include/PacBio/seqan/random/random_beta_kfunc.h
  494. include/PacBio/seqan/random/random_geometric.h
  495. include/PacBio/seqan/random/random_lognormal.h
  496. include/PacBio/seqan/random/random_mt19937.h
  497. include/PacBio/seqan/random/random_normal.h
  498. include/PacBio/seqan/random/random_rng_functor.h
  499. include/PacBio/seqan/random/random_shuffle.h
  500. include/PacBio/seqan/random/random_uniform.h
  501. include/PacBio/seqan/realign.h
  502. include/PacBio/seqan/realign/realign_base.h
  503. include/PacBio/seqan/realign/realign_helper_functions.h
  504. include/PacBio/seqan/reduced_aminoacid.h
  505. include/PacBio/seqan/reduced_aminoacid/reduced_aminoacid_base.h
  506. include/PacBio/seqan/reduced_aminoacid/reduced_aminoacid_base_late.h
  507. include/PacBio/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h
  508. include/PacBio/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h
  509. include/PacBio/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h
  510. include/PacBio/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h
  511. include/PacBio/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h
  512. include/PacBio/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h
  513. include/PacBio/seqan/roi_io.h
  514. include/PacBio/seqan/roi_io/read_roi.h
  515. include/PacBio/seqan/roi_io/roi_file.h
  516. include/PacBio/seqan/roi_io/roi_io_context.h
  517. include/PacBio/seqan/roi_io/roi_record.h
  518. include/PacBio/seqan/roi_io/write_roi.h
  519. include/PacBio/seqan/score.h
  520. include/PacBio/seqan/score/score_base.h
  521. include/PacBio/seqan/score/score_edit.h
  522. include/PacBio/seqan/score/score_matrix.h
  523. include/PacBio/seqan/score/score_matrix_data.h
  524. include/PacBio/seqan/score/score_matrix_io.h
  525. include/PacBio/seqan/score/score_simple.h
  526. include/PacBio/seqan/seeds.h
  527. include/PacBio/seqan/seeds/banded_chain_alignment.h
  528. include/PacBio/seqan/seeds/banded_chain_alignment_impl.h
  529. include/PacBio/seqan/seeds/banded_chain_alignment_profile.h
  530. include/PacBio/seqan/seeds/banded_chain_alignment_scout.h
  531. include/PacBio/seqan/seeds/banded_chain_alignment_traceback.h
  532. include/PacBio/seqan/seeds/basic_iter_indirect.h
  533. include/PacBio/seqan/seeds/seeds_base.h
  534. include/PacBio/seqan/seeds/seeds_combination.h
  535. include/PacBio/seqan/seeds/seeds_extension.h
  536. include/PacBio/seqan/seeds/seeds_global_chaining.h
  537. include/PacBio/seqan/seeds/seeds_global_chaining_base.h
  538. include/PacBio/seqan/seeds/seeds_global_chaining_gusfield.h
  539. include/PacBio/seqan/seeds/seeds_seed_base.h
  540. include/PacBio/seqan/seeds/seeds_seed_chained.h
  541. include/PacBio/seqan/seeds/seeds_seed_diagonal.h
  542. include/PacBio/seqan/seeds/seeds_seed_set_base.h
  543. include/PacBio/seqan/seeds/seeds_seed_set_non_scored.h
  544. include/PacBio/seqan/seeds/seeds_seed_set_scored.h
  545. include/PacBio/seqan/seeds/seeds_seed_set_unordered.h
  546. include/PacBio/seqan/seeds/seeds_seed_simple.h
  547. include/PacBio/seqan/seq_io.h
  548. include/PacBio/seqan/seq_io/fai_index.h
  549. include/PacBio/seqan/seq_io/fasta_fastq.h
  550. include/PacBio/seqan/seq_io/genomic_region.h
  551. include/PacBio/seqan/seq_io/read_embl.h
  552. include/PacBio/seqan/seq_io/read_genbank.h
  553. include/PacBio/seqan/seq_io/sequence_file.h
  554. include/PacBio/seqan/sequence.h
  555. include/PacBio/seqan/sequence/adapt_array_pointer.h
  556. include/PacBio/seqan/sequence/adapt_std_list.h
  557. include/PacBio/seqan/sequence/adapt_std_string.h
  558. include/PacBio/seqan/sequence/adapt_std_vector.h
  559. include/PacBio/seqan/sequence/adapt_thrust_vector.h
  560. include/PacBio/seqan/sequence/container_view.h
  561. include/PacBio/seqan/sequence/iter_concat_virtual.h
  562. include/PacBio/seqan/sequence/segment_base.h
  563. include/PacBio/seqan/sequence/segment_infix.h
  564. include/PacBio/seqan/sequence/segment_prefix.h
  565. include/PacBio/seqan/sequence/segment_suffix.h
  566. include/PacBio/seqan/sequence/segment_utils.h
  567. include/PacBio/seqan/sequence/sequence_concatenator.h
  568. include/PacBio/seqan/sequence/sequence_forwards.h
  569. include/PacBio/seqan/sequence/sequence_interface.h
  570. include/PacBio/seqan/sequence/sequence_lexical.h
  571. include/PacBio/seqan/sequence/sequence_shortcuts.h
  572. include/PacBio/seqan/sequence/string_alloc.h
  573. include/PacBio/seqan/sequence/string_array.h
  574. include/PacBio/seqan/sequence/string_base.h
  575. include/PacBio/seqan/sequence/string_block.h
  576. include/PacBio/seqan/sequence/string_cstyle.h
  577. include/PacBio/seqan/sequence/string_packed.h
  578. include/PacBio/seqan/sequence/string_packed_old.h
  579. include/PacBio/seqan/sequence/string_set_base.h
  580. include/PacBio/seqan/sequence/string_set_concat_direct.h
  581. include/PacBio/seqan/sequence/string_set_dependent_generous.h
  582. include/PacBio/seqan/sequence/string_set_dependent_tight.h
  583. include/PacBio/seqan/sequence/string_set_device.h
  584. include/PacBio/seqan/sequence/string_set_owner.h
  585. include/PacBio/seqan/sequence/string_set_segment.h
  586. include/PacBio/seqan/sequence/string_set_view.h
  587. include/PacBio/seqan/sequence_journaled.h
  588. include/PacBio/seqan/sequence_journaled/journal_entries_sorted_array.h
  589. include/PacBio/seqan/sequence_journaled/journal_entry.h
  590. include/PacBio/seqan/sequence_journaled/sequence_journaled.h
  591. include/PacBio/seqan/sequence_journaled/sequence_journaled_iterator.h
  592. include/PacBio/seqan/sequence_journaled/sequence_journaled_iterator_fast.h
  593. include/PacBio/seqan/simple_intervals_io.h
  594. include/PacBio/seqan/simple_intervals_io/simple_intervals_file.h
  595. include/PacBio/seqan/simple_intervals_io/simple_intervals_io.h
  596. include/PacBio/seqan/statistics.h
  597. include/PacBio/seqan/statistics/statistics_base.h
  598. include/PacBio/seqan/statistics/statistics_markov_model.h
  599. include/PacBio/seqan/store.h
  600. include/PacBio/seqan/store/store_align.h
  601. include/PacBio/seqan/store/store_align_intervals.h
  602. include/PacBio/seqan/store/store_all.h
  603. include/PacBio/seqan/store/store_annotation.h
  604. include/PacBio/seqan/store/store_base.h
  605. include/PacBio/seqan/store/store_contig.h
  606. include/PacBio/seqan/store/store_intervaltree.h
  607. include/PacBio/seqan/store/store_io.h
  608. include/PacBio/seqan/store/store_io_gff.h
  609. include/PacBio/seqan/store/store_io_sam.h
  610. include/PacBio/seqan/store/store_io_ucsc.h
  611. include/PacBio/seqan/store/store_library.h
  612. include/PacBio/seqan/store/store_matepair.h
  613. include/PacBio/seqan/store/store_read.h
  614. include/PacBio/seqan/stream.h
  615. include/PacBio/seqan/stream/adapt_ios.h
  616. include/PacBio/seqan/stream/buffered_stream.h
  617. include/PacBio/seqan/stream/file_stream.h
  618. include/PacBio/seqan/stream/formatted_file.h
  619. include/PacBio/seqan/stream/guess_format.h
  620. include/PacBio/seqan/stream/iostream_bgzf.h
  621. include/PacBio/seqan/stream/iostream_bgzf_impl.h
  622. include/PacBio/seqan/stream/iostream_bzip2.h
  623. include/PacBio/seqan/stream/iostream_bzip2_impl.h
  624. include/PacBio/seqan/stream/iostream_zip.h
  625. include/PacBio/seqan/stream/iostream_zip_impl.h
  626. include/PacBio/seqan/stream/iostream_zutil.h
  627. include/PacBio/seqan/stream/iter_stream.h
  628. include/PacBio/seqan/stream/lexical_cast.h
  629. include/PacBio/seqan/stream/stream_base.h
  630. include/PacBio/seqan/stream/stream_compressor.h
  631. include/PacBio/seqan/stream/tokenization.h
  632. include/PacBio/seqan/stream/virtual_stream.h
  633. include/PacBio/seqan/system.h
  634. include/PacBio/seqan/system/file_async.h
  635. include/PacBio/seqan/system/file_directory.h
  636. include/PacBio/seqan/system/file_forwards.h
  637. include/PacBio/seqan/system/file_sync.h
  638. include/PacBio/seqan/system/system_base.h
  639. include/PacBio/seqan/system/system_condition.h
  640. include/PacBio/seqan/system/system_critical_section.h
  641. include/PacBio/seqan/system/system_event.h
  642. include/PacBio/seqan/system/system_forwards.h
  643. include/PacBio/seqan/system/system_mutex.h
  644. include/PacBio/seqan/system/system_thread.h
  645. include/PacBio/seqan/translation.h
  646. include/PacBio/seqan/translation/translation.h
  647. include/PacBio/seqan/translation/translation_tables.h
  648. include/PacBio/seqan/ucsc_io.h
  649. include/PacBio/seqan/ucsc_io/ucsc_file.h
  650. include/PacBio/seqan/ucsc_io/ucsc_io.h
  651. include/PacBio/seqan/ucsc_io/ucsc_record.h
  652. include/PacBio/seqan/vcf_io.h
  653. include/PacBio/seqan/vcf_io/read_vcf.h
  654. include/PacBio/seqan/vcf_io/vcf_file.h
  655. include/PacBio/seqan/vcf_io/vcf_header.h
  656. include/PacBio/seqan/vcf_io/vcf_header_record.h
  657. include/PacBio/seqan/vcf_io/vcf_io_context.h
  658. include/PacBio/seqan/vcf_io/vcf_record.h
  659. include/PacBio/seqan/vcf_io/write_vcf.h
  660. include/PacBio/seqan/version.h
  661. @owner
  662. @group
  663. @mode
Collapse this list.
Dependency lines:
  • pbseqan>0:biology/pbseqan
To install the port:
cd /usr/ports/biology/pbseqan/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/pbseqan
  • pkg install pbseqan
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: pbseqan
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1550366556 SHA256 (PacificBiosciences-seqan-g20171011-21d95d737d8decb5cc3693b9065d81e831e7f57d_GH0.tar.gz) = dcdc564c877190089bd691ab4097164266e675217645613426fb1ff44029da8c SIZE (PacificBiosciences-seqan-g20171011-21d95d737d8decb5cc3693b9065d81e831e7f57d_GH0.tar.gz) = 1527033

Packages (timestamps in pop-ups are UTC):
pbseqan
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latestg20171011g20171011g20171011g20171011g20171011-g20171011-
FreeBSD:13:quarterlyg20171011g20171011g20171011g20171011g20171011g20171011g20171011g20171011
FreeBSD:14:latestg20171011g20171011g20171011g20171011g20171011g20171011-g20171011
FreeBSD:14:quarterlyg20171011g20171011-g20171011g20171011g20171011g20171011g20171011
FreeBSD:15:latestg20171011g20171011n/ag20171011n/ag20171011g20171011g20171011
FreeBSD:15:quarterly--n/a-n/a---
This port has no dependencies.
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_pbseqan
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/PacificBiosciences/seqan/tar.gz/21d95d737d8decb5cc3693b9065d81e831e7f57d?dummy=/
Collapse this list.

Number of commits found: 9

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
g20171011
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
g20171011
16 Oct 2021 09:51:39
commit hash: 4460cf727a7788c9ce21f3344ce5745e5cd9fc4acommit hash: 4460cf727a7788c9ce21f3344ce5745e5cd9fc4acommit hash: 4460cf727a7788c9ce21f3344ce5745e5cd9fc4acommit hash: 4460cf727a7788c9ce21f3344ce5745e5cd9fc4a files touched by this commit
Jimmy Olgeni (olgeni) search for other commits by this committer
*: fix tab vs. space issues, and comments according to the guide.
g20171011
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
g20171011
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
g20171011
24 Nov 2019 15:53:01
Revision:518334Original commit files touched by this commit
jwb search for other commits by this committer
biology/unanimity and dependencies: Flag as no longer open source

PacBio now provides unanimity only as a binary package through bioconda.
See https://github.com/PacificBiosciences/ccs.
g20171011
20 Feb 2019 01:53:35
Revision:493403Original commit files touched by this commit
jwb search for other commits by this committer
biology/pbseqan: Mark deprecated

Upstream was merged into the SeqAn project represented by biology/seqan.
g20171011
17 Feb 2019 19:31:24
Revision:493182Original commit files touched by this commit
jwb search for other commits by this committer
biology/pbseqan: Minor upgrade to latest commit

In preparation for biology/unanimity upgrade
g20171002
21 Apr 2018 17:21:30
Revision:467901Original commit files touched by this commit
jwb search for other commits by this committer
biology/pbseqan: Pacific Biosciences patched and stripped down SeqAn

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15152

Number of commits found: 9