FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

I am looking for an LTO tape library. Do you have one to spare?
non port: head/biology/phred/Makefile
SVNWeb

Number of commits found: 4

Fri, 3 Jan 2014
[ 15:46 adamw ] Original commit 
338550 biology/biojava/Makefile
338550 biology/blast/Makefile
338550 biology/consed/Makefile
338550 biology/finchtv/Makefile
338550 biology/mafft/Makefile
338550 biology/mummer/Makefile
338550 biology/njplot/Makefile
338550 biology/p5-bioperl-run/Makefile
338550 biology/p5-bioperl/Makefile
338550 biology/paml/Makefile

(Only the first 10 of 14 ports in this commit are shown above. View all ports for this commit)
Convert biology to MDOCS and MEXAMPLES
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Sun, 25 May 2008
[ 23:05 edwin ] Original commit 
1.2 biology/consed/Makefile
1.2 biology/phd2fasta/Makefile
1.2 biology/phrap/Makefile
1.2 biology/phred/Makefile
Teach the building cluster that these ports are not to be build
Sat, 24 May 2008
[ 07:04 edwin ] Original commit 
1.101 biology/Makefile
1.1 biology/phred/Makefile
1.1 biology/phred/distinfo
1.1 biology/phred/files/patch-Makefile
1.1 biology/phred/pkg-descr
New port: biology/consed viewing and editing workbench for sequence
assembly

        Consed is a tool for viewing, editing, and finishing sequence
        assemblies.

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found: 4

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
bashOct 01
rsyslog7Sep 30
fishSep 29
bash*Sep 25
bash-static*Sep 25
chromiumSep 25
krfbSep 25
linux-c6-nssSep 25
linux-firefoxSep 25
linux-seamonkeySep 25
linux-thunderbirdSep 25
linux_base-c6*Sep 25
nssSep 25
asterisk11Sep 18
squidSep 18

10 vulnerabilities affecting 33 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds


Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24165
Broken 104
Deprecated 27
Ignore 359
Forbidden 3
Restricted 205
No CDROM 93
Vulnerable 20
Expired 2
Set to expire 22
Interactive 0
new 24 hours 6
new 48 hours14
new 7 days54
new fortnight146
new month292

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.