FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

Please give me your LTO-4 or better tape library and I'll put it to good use.
found something from the cache
non port: head/biology/phred/files/patch-Makefile
SVNWeb

Number of commits found: 1

Sat, 24 May 2008
[ 07:04 edwin ] Original commit 
1.101 biology/Makefile
1.1 biology/phred/Makefile
1.1 biology/phred/distinfo
1.1 biology/phred/files/patch-Makefile
1.1 biology/phred/pkg-descr
New port: biology/consed viewing and editing workbench for sequence
assembly

        Consed is a tool for viewing, editing, and finishing sequence
        assemblies.

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found: 1

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
puttyMar 05
qt4-guiMar 05
qt5-guiMar 05
chromiumMar 04
jenkinsMar 01
jenkins-ltsMar 01
firefoxFeb 27
firefox-esrFeb 27
libxulFeb 27
linux-firefoxFeb 27
linux-seamonkeyFeb 27
linux-thunderbirdFeb 27
seamonkeyFeb 27
thunderbirdFeb 27
php5Feb 26

12 vulnerabilities affecting 37 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24630
Broken 93
Deprecated 38
Ignore 372
Forbidden 1
Restricted 207
No CDROM 93
Vulnerable 22
Expired 0
Set to expire 32
Interactive 0
new 24 hours 1
new 48 hours3
new 7 days30
new fortnight61
new month121

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.