phylip 3.69,1 biology =1

A Phylogeny Inference Package

There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
Port Added: 10 Jul 2000 00:25:48
License: not specified in port

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              PHYLIP - Phylogeny Inference Package (version 3.6)

PHYLIP (the PHYLogeny Inference Package) is a package of programs for
inferring phylogenies (evolutionary trees).  Methods that are
available in the package include parsimony, distance matrix, and
likelihood methods, including bootstrapping and consensus trees. Data
types that can be handled include molecular sequences, gene
frequencies, restriction sites, distance matrices, and 0/1 discrete
characters.

 Joe Felsenstein
 Department of Genetics
 University of Washington
 Box 357360
 Seattle, Washington 98195-7360, U.S.A.

WWW: http://evolution.genetics.washington.edu/phylip.html

CVSWeb : Sources : Main Web Site : Distfiles Availability : PortsMon

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NOTE: FreshPorts displays only required dependencies information. Optional dependencies are not covered.
Required To Build: shells/bash, devel/gmake, x11/libX11, x11-toolkits/libXaw, x11-toolkits/libXt
Required To Run: x11/libX11, x11-toolkits/libXaw, x11-toolkits/libXt
There are no ports dependent upon this port

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To install the port: cd /usr/ports/biology/phylip/ && make install clean
To add the package: pkg_add -r phylip

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Configuration Options

     No options to configure

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Master Sites:

http://evolution.gs.washington.edu/phylip/download/

ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/

- Get Rid MD5 support

For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.

-Update to 3.69

PR:             138813
Submitted by:   Ports Fury
Feature safe:   yes

- Update X.org ports to 7.4+ (few ports are more recent than the katamari).
- Bump PORTREVISION for all ports depending on libglut since the shlib
version number went from 4 to 3.
- Bump PORTREVISION for all ports depending on libXaw as libXaw.so.8 isn't
installed anymore.
- Couple of ports fixes (mostly missing xorg components added to USE_XORG).

- Fix build

Reported by:    QA Tindie

- Update to 3.68

- Fix build depends
- Bump port revision

Reported by:    pointyhat via pav

- Update to 3.67
- Sanitize Makefile a little bit

- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)

- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

Update to 3.66

PR:             ports/108434
Submitted by:   Marcelo Araujo

Reset dbader@ece.unm.edu due to timeouts and no response to email.

Hat:            portmgr

- Respect X11BASE

Approved by:    maintainer (implicit)

Put PORTEPOCH back.

Reported by:    chkversion

Update to 3.65.

PR:             ports/92182
Submitted by:   "Choe, Cheng-Dae" <whitekid@gmail.com>
Approved by:    dbader@ece.unm.edu (maintainer, timeout 14 days)

SHA256ify

Approved by:    krion@

Bump PORTEPOCH. 3.6 < 3.62

Pointyhat to:   arved

Upgrade to 3.62

PR:             79234
Submitted by:   David A. Bader <dbader@ece.unm.edu>

- Add some sites I found with Google, as old master site don't have this
  version anymore

Reported by:    pointyhat via krion

- Update to 3.62
- Install font files

PR:             ports/72212
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:    David A. Bader <dbader@ece.unm.edu> (maintainer)

SIZEify (maintainer timeout)

- Update to 3.6.b

PR:             ports/62142
Submitted by:   David A. Bader <dbader@ece.unm.edu> (maintainer)

Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992

De-pkg-comment.

Update to version 3.6.a3.

PR:             41412
Submitted by:   David A. Bader <dbader@eece.unm.edu>

Additional clean-up:
* Respect CC, CFLAGS, X11BASE.
* Use versioned DIST_SUBDIR.

Approved by:    maintainer

- Update to version 3.6.a2.1 - since the distribution tarball hadn't been    
renamed between versions, this port failed checksum.   - Apply some whitespace
edits and cut pkg-descr down to size to placate     portlint.    

Add support for %%PORTDOCS%%.    

This port require X libraries to build/run.    

updated port biology/phylip from vers 3.5 to 3.6    

Convert category biology to new layout.  

Adding phylip version 3.5.    

12 vulnerabilities affecting 17 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities