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non port: biology/phyml/distinfo

Number of commits found: 13

Friday, 2 Sep 2022
07:57 Wen Heping (wen) search for other commits by this committer
biology/phyml: Update to 3.3.20220408
commit hash: 026150563ee449fc13d0363a5e25b14a888772e7 commit hash: 026150563ee449fc13d0363a5e25b14a888772e7 commit hash: 026150563ee449fc13d0363a5e25b14a888772e7 commit hash: 026150563ee449fc13d0363a5e25b14a888772e7 0261505
Sunday, 2 Jan 2022
17:31 Fernando ApesteguĂ­a (fernape) search for other commits by this committer
biology/phyml: update to 3.3.20211231

ChangeLog:
https://github.com/stephaneguindon/phyml/compare/v3.3.20211118...v3.3.20211231

Remove patches already merged into upstream.

Reported by: portscout
commit hash: 59a8ef603d053f64e4067f3723feeeb60610bedb commit hash: 59a8ef603d053f64e4067f3723feeeb60610bedb commit hash: 59a8ef603d053f64e4067f3723feeeb60610bedb commit hash: 59a8ef603d053f64e4067f3723feeeb60610bedb 59a8ef6
Friday, 10 Jul 2020
09:45 fernape search for other commits by this committer
biology/phyml: update to 3.3.20200621

From ChangeLog:
https://github.com/stephaneguindon/phyml/releases/tag/v3.3.20200621

This release fixes a few minor bugs (see recent commits). The manual also gives
extra XML configuration information in order to apply fancy substitution models
(e.g., CAT-like) on single- or multiple-gene data sets

Reported by:	portscout
Original commitRevision:541852 
Tuesday, 10 Sep 2019
21:04 fernape search for other commits by this committer
biology/phyml: update to 3.3.20190909

While here, add license.

Reported by:	portscout
Original commitRevision:511777 
Monday, 20 May 2019
09:17 wen search for other commits by this committer
- Update to 3.3.20190321
Original commitRevision:502098 
Saturday, 23 Jun 2018
15:53 fernape search for other commits by this committer
biology/phyml: update to v3.3.20180621

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D15967
Original commitRevision:473138 
Tuesday, 15 May 2018
03:17 wen search for other commits by this committer
- Update to 3.3.20180214
Original commitRevision:469992 
Thursday, 1 Feb 2018
07:26 wen search for other commits by this committer
- Update to 3.3.20180129
Original commitRevision:460569 
Monday, 4 Sep 2017
00:01 sunpoet search for other commits by this committer
Update to 3.3.20170530

Changes:	https://github.com/stephaneguindon/phyml/releases
Original commitRevision:449234 
Friday, 26 Feb 2016
13:03 wen search for other commits by this committer
- Update to 3.2.0
- Update pkg-descr

PR:		205890
Submitted by:	tkato432@yahoo.com
Original commitRevision:409605 
Monday, 4 Feb 2013
10:07 araujo search for other commits by this committer
- Update to 20121109.

PR:		ports/175014
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Original commitRevision:311601 
Saturday, 19 Mar 2011
12:38 miwi search for other commits by this committer
- Get Rid MD5 support
Original commit
Tuesday, 21 Jul 2009
01:10 amdmi3 search for other commits by this committer
PhyML is a software that estimates maximum likelihood phylogenies from
alignments of nucleotide or amino acid sequences. It provides a wide range of
options that were designed to facilitate standard phylogenetic analyses. The
main strengths of PhyML lies in the large number of substitution models coupled
to various options to search the space of phylogenetic tree topologies, going
from very fast and efficient methods to slower but generally more accurate
approaches. It also implements two methods to evaluate branch supports in a
sound statistical framework (the non-parametric bootstrap and the approximate
likelihood ratio test). PhyML was designed to process moderate to large data
sets. In theory, alignments with up to 4,000 sequences 2,000,000 character-long
can analyzed. In practice however, the amount of memory required to process a
data set is proportional of the product of the number of sequences by their
length. Hence, a large number of sequences can only be processed provided that
they are short. Also, PhyML can handle long sequences provided that they are
not numerous. With most standard personal computers, the "comfort zone" for
PhyML generally lies around 3 to 500 sequences less than 2,000 character long.

WWW: http://code.google.com/p/phyml/

PR:             136877
Submitted by:   Ben Allen <ben@sysadminschronicles.com>
Original commit

Number of commits found: 13