FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

Please give me your LTO-4 or better tape library and I'll put it to good use.
found something from the cache
non port: head/biology/phyml/files/patch-src-configure
SVNWeb

Number of commits found: 1

Tue, 21 Jul 2009
[ 01:10 amdmi3 ] Original commit 
1.111 biology/Makefile
1.1 biology/phyml/Makefile
1.1 biology/phyml/distinfo
1.1 biology/phyml/files/patch-src-configure
1.1 biology/phyml/files/patch-src-configure.ac
1.1 biology/phyml/pkg-descr
PhyML is a software that estimates maximum likelihood phylogenies from
alignments of nucleotide or amino acid sequences. It provides a wide range of
options that were designed to facilitate standard phylogenetic analyses. The
main strengths of PhyML lies in the large number of substitution models coupled
to various options to search the space of phylogenetic tree topologies, going
from very fast and efficient methods to slower but generally more accurate
approaches. It also implements two methods to evaluate branch supports in a
sound statistical framework (the non-parametric bootstrap and the approximate
likelihood ratio test). PhyML was designed to process moderate to large data
sets. In theory, alignments with up to 4,000 sequences 2,000,000 character-long
can analyzed. In practice however, the amount of memory required to process a
data set is proportional of the product of the number of sequences by their
length. Hence, a large number of sequences can only be processed provided that
they are short. Also, PhyML can handle long sequences provided that they are
not numerous. With most standard personal computers, the "comfort zone" for
PhyML generally lies around 3 to 500 sequences less than 2,000 character long.

WWW: http://code.google.com/p/phyml/

PR:             136877
Submitted by:   Ben Allen <ben@sysadminschronicles.com>

Number of commits found: 1

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
xen-toolsAug 04
libidn*Aug 03
chicken*Jul 31
net-snmpJul 31
net-snmpJul 31
bind910Jul 28
bind99Jul 28
logstashJul 27
openssh-portableJul 27
chromiumJul 25
wordpress*Jul 24
wordpress*Jul 24
wordpress*Jul 24
wordpress*Jul 24
wordpress-zh_TW*Jul 24

14 vulnerabilities affecting 24 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 25021
Broken 198
Deprecated 45
Ignore 499
Forbidden 1
Restricted 204
No CDROM 94
Vulnerable 43
Expired 1
Set to expire 33
Interactive 0
new 24 hours 4
new 48 hours4
new 7 days13
new fortnight48
new month152

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.