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non port: head/biology/plink/Makefile
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Number of commits found: 11

Fri, 1 Apr 2016
[ 13:29 mat ] Original commit 
412344 Mk/Uses/gecko.mk
412344 Mk/bsd.fpc.mk
412344 Mk/bsd.gecko.mk
412344 Mk/bsd.port.mk
412344 accessibility/accerciser/Makefile
412344 accessibility/at-spi/Makefile
412344 accessibility/at-spi2-atk/Makefile
412344 accessibility/at-spi2-core/Makefile
412344 accessibility/caribou/Makefile
412344 accessibility/dasher/Makefile

(Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Fri, 11 Dec 2015
[ 08:48 miwi ] Original commit 
403506 audio/praat/Makefile
403506 biology/bwa/Makefile
403506 biology/cd-hit/Makefile
403506 biology/cdbfasta/Makefile
403506 biology/fastool/Makefile
403506 biology/fasttree/Makefile
403506 biology/fastx-toolkit/Makefile
403506 biology/gmap/Makefile
403506 biology/hmmer/Makefile
403506 biology/libgtextutils/Makefile

(Only the first 10 of 54 ports in this commit are shown above. View all ports for this commit)
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
Wed, 10 Sep 2014
[ 20:50 gerald ] Original commit 
367888 accessibility/accerciser/Makefile
367888 accessibility/jovie/Makefile
367888 accessibility/kaccessible/Makefile
367888 accessibility/kdeaccessibility4/Makefile
367888 accessibility/kmag/Makefile
367888 accessibility/kmousetool/Makefile
367888 accessibility/kmouth/Makefile
367888 accessibility/orca/Makefile
367888 arabic/kde4-l10n/Makefile
367888 arabic/libreoffice/Makefile

(Only the first 10 of 3171 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Mon, 10 Mar 2014
[ 20:55 gerald ] Original commit 
347809 archivers/hs-tar/Makefile
347809 archivers/hs-zip-archive/Makefile
347809 archivers/hs-zlib-bindings/Makefile
347809 archivers/hs-zlib-conduit/Makefile
347809 archivers/hs-zlib-enum/Makefile
347809 archivers/hs-zlib/Makefile
347809 astro/R-cran-maptools/Makefile
347809 astro/astrometry/Makefile
347809 astro/nightfall/Makefile
347809 astro/py-RO/Makefile

(Only the first 10 of 1081 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Fri, 7 Mar 2014
[ 15:52 bapt ] Original commit 
347402 benchmarks/netio/Makefile
347402 benchmarks/pybench/Makefile
347402 benchmarks/scimark2/Makefile
347402 benchmarks/scimark2c/Makefile
347402 biology/biojava/Makefile
347402 biology/blat/Makefile
347402 biology/libsbml/Makefile
347402 biology/plink/Makefile
347402 biology/seqan/Makefile
Convert b* to USES=zip
Sun, 16 Feb 2014
[ 17:15 tijl ] Original commit 
344614 Mk/Uses/cran.mk
344614 Mk/Uses/fortran.mk
344614 Mk/bsd.gcc.mk
344614 Mk/bsd.octave.mk
344614 Mk/bsd.port.mk
344614 benchmarks/himenobench/Makefile
344614 benchmarks/hpl/Makefile
344614 benchmarks/octave-forge-benchmark/Makefile
344614 biology/crux/Makefile
344614 biology/plink/Makefile

(Only the first 10 of 211 ports in this commit are shown above. View all ports for this commit)
Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)
Fri, 13 Dec 2013
[ 09:34 gerald ] Original commit 
336328 biology/plink/Makefile
336328 biology/plink/files/patch-elf.cpp
336328 biology/plink/files/patch-idhelp.cpp
336328 biology/plink/files/patch-sets.cpp
Fix the build with more standards-compliant compilers such as GCC 4.7. [1]

On the way replace USE_GMAKE by USES=gmake.

PR:		184566 [1], 182136
Submitted by:	Christoph Moench-Tegeder <cmt@burggraben.net> [1]
Approved by:	maintainer (Jason Bacon <jwbacon@tds.net>) [1]
Wed, 11 Dec 2013
[ 14:43 bapt ] Original commit 
336171 biology/crux/Makefile
336171 biology/embassy/Makefile
336171 biology/emboss/Makefile
336171 biology/iolib/Makefile
336171 biology/libsbml/Makefile
336171 biology/mopac/Makefile
336171 biology/ortep3/Makefile
336171 biology/plink/Makefile
336171 biology/plinkseq/Makefile
336171 biology/protomol/Makefile

(Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
Sat, 26 Oct 2013
[ 00:52 gerald ] Original commit 
331644 archivers/hs-tar/Makefile
331644 archivers/hs-zip-archive/Makefile
331644 archivers/hs-zlib-bindings/Makefile
331644 archivers/hs-zlib-conduit/Makefile
331644 archivers/hs-zlib-enum/Makefile
331644 archivers/hs-zlib/Makefile
331644 astro/R-cran-maptools/Makefile
331644 astro/astrometry/Makefile
331644 astro/nightfall/Makefile
331644 astro/py-RO/Makefile

(Only the first 10 of 1147 ports in this commit are shown above. View all ports for this commit)
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Thu, 27 Sep 2012
[ 09:59 makc ] Original commit 
304954 biology/Makefile
304954 biology/plink
304954 biology/plink/Makefile
304954 biology/plink/distinfo
304954 biology/plink/files
304954 biology/plink/files/patch-Makefile
304954 biology/plink/pkg-descr
304954 biology/plinkseq
304954 biology/plinkseq/Makefile
304954 biology/plinkseq/distinfo

(Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
Add new ports biology/plink [1] and biology/plinkseq [2]:

PLINK is a free, open-source whole genome association analysis toolset.
PLINK/SEQ is an open-source C/C++ library for working with human
genetic variation data.

PR:		ports/171918 [1]
PR:		ports/171922 [2]
Submitted by:	Jason Bacon <jwbacon at tds.net>

Number of commits found: 11

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