FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link. Remember
I remember
I am looking for an LTO tape library. Do you have one to spare?
Port details
plinkseq 0.10 biology on this many watch lists=0 search for ports that depend on this port
Toolset for working with human genetic variation data
Maintained by: jwbacon@tds.net search for ports maintained by this maintainer
Port Added: 27 Sep 2012 10:00:09
Also Listed In: science
License: GPLv2


PLINK/SEQ is an open-source C/C++ library for working with human
genetic variation data. The specific focus is to provide a platform
for analytic tool development for variation data from large-scale
resequencing and genotyping projects, particularly whole-exome and
whole-genome studies. It is independent of (but designed to be
complementary to) the existing PLINK package.

WWW: http://atgu.mgh.harvard.edu/plinkseq/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Required To Build:
  1. devel/gmake
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/plinkseq/ && make install clean
To add the package: pkg install biology/plinkseq


Configuration Options
     No options to configure

Master Sites:
  1. http://distcache.FreeBSD.org/ports-distfiles/
  2. http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/

Number of commits found: 10

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
12 Oct 2014 03:16:10
Original commit files touched by this commit  0.10
Revision:370680
wen search for other commits by this committer
- Update to 0.10

PR:		194309
Submitted by:	jwbacon@tds.net(maintainer)
04 Oct 2014 15:12:45
Original commit files touched by this commit  0.08_3
Revision:369969
sunpoet search for other commits by this committer
- Update to 2.6.0
- Update MASTER_SITES
- Add my LOCAL to MASTER_SITES
- Use USE_CSTD
- Use MAKE_CMD
- Reformat pkg-descr
- Update WWW
- Take maintainership
- Bump PORTREVISION for devel/protobuf shlib change

Changes:	https://code.google.com/p/protobuf/source/browse/trunk/CHANGES.txt
22 Jul 2014 22:12:15
Original commit files touched by this commit  0.08_2
Revision:362596
amdmi3 search for other commits by this committer
- Switch to USES=libtool, drop .la files
- Fix shebangs

Approved by:	portmgr blanket
07 Mar 2014 11:37:35
Original commit files touched by this commit  0.08_1
Revision:347367
bapt search for other commits by this committer
Convert to dos2unix
31 Jan 2014 12:33:12
Original commit files touched by this commit  0.08_1
Revision:341988
miwi search for other commits by this committer
- Stage support
11 Dec 2013 14:43:51
Original commit files touched by this commit  0.08_1
Revision:336171
bapt search for other commits by this committer
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
20 Sep 2013 15:55:44
Original commit files touched by this commit  0.08_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
21 Mar 2013 14:09:23
Original commit files touched by this commit  0.08_1
Revision:314843
vanilla search for other commits by this committer
Fix build with protobuf-2.5.0

Obtained from:	miwi@
18 Mar 2013 15:14:28
Original commit files touched by this commit  0.08_1
Revision:314580
vanilla search for other commits by this committer
1: Upgrade protobuf to 2.5.0.
2: bump revision.
3: document UPDATING.
27 Sep 2012 09:59:25
Original commit files touched by this commit  0.08
Revision:304954
makc search for other commits by this committer
Add new ports biology/plink [1] and biology/plinkseq [2]:

PLINK is a free, open-source whole genome association analysis toolset.
PLINK/SEQ is an open-source C/C++ library for working with human
genetic variation data.

PR:		ports/171918 [1]
PR:		ports/171922 [2]
Submitted by:	Jason Bacon <jwbacon at tds.net>

Number of commits found: 10

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
jenkinsOct 31
jenkins-ltsOct 31
twikiOct 31
libsshOct 29
libpurpleOct 24
pidginOct 24
phpmyadminOct 22
asterisk11Oct 21
libxml2Oct 18
drupal7Oct 16
firefox*Oct 16
firefox-esr*Oct 16
libxul*Oct 16
linux-firefox*Oct 16
linux-seamonkey*Oct 16

7 vulnerabilities affecting 10 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds


Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 24275
Broken 98
Deprecated 42
Ignore 356
Forbidden 2
Restricted 206
No CDROM 93
Vulnerable 18
Expired 0
Set to expire 38
Interactive 0
new 24 hours 5
new 48 hours5
new 7 days14
new fortnight36
new month136

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2014 Dan Langille. All rights reserved.