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Port details
plinkseq 0.08_2 biology on this many watch lists=0 search for ports that depend on this port
Toolset for working with human genetic variation data
Maintained by: jwbacon@tds.net search for ports maintained by this maintainer
Port Added: 27 Sep 2012 10:00:09
Also Listed In: science
License: GPLv2


PLINK/SEQ is an open-source C/C++ library for working with human
genetic variation data. The specific focus is to provide a platform
for analytic tool development for variation data from large-scale
resequencing and genotyping projects, particularly whole-exome and
whole-genome studies. It is independent of (but designed to be
complementary to) the existing PLINK package.

WWW: http://atgu.mgh.harvard.edu/plinkseq/
SVNWeb : Main Web Site : Distfiles Availability : PortsMon

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Required Libraries:
  1. devel/protobuf
There are no ports dependent upon this port

To install the port: cd /usr/ports/biology/plinkseq/ && make install clean
To add the package: pkg install biology/plinkseq


Configuration Options
     No options to configure

Master Sites:
  1. http://atgu.mgh.harvard.edu/plinkseq/dist/version-0.08/
  2. http://distcache.FreeBSD.org/ports-distfiles/

Number of commits found: 8

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
22 Jul 2014 22:12:15
Original commit files touched by this commit  0.08_2
Revision:362596
amdmi3 search for other commits by this committer
- Switch to USES=libtool, drop .la files
- Fix shebangs

Approved by:	portmgr blanket
07 Mar 2014 11:37:35
Original commit files touched by this commit  0.08_1
Revision:347367
bapt search for other commits by this committer
Convert to dos2unix
31 Jan 2014 12:33:12
Original commit files touched by this commit  0.08_1
Revision:341988
miwi search for other commits by this committer
- Stage support
11 Dec 2013 14:43:51
Original commit files touched by this commit  0.08_1
Revision:336171
bapt search for other commits by this committer
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
20 Sep 2013 15:55:44
Original commit files touched by this commit  0.08_1
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
21 Mar 2013 14:09:23
Original commit files touched by this commit  0.08_1
Revision:314843
vanilla search for other commits by this committer
Fix build with protobuf-2.5.0

Obtained from:	miwi@
18 Mar 2013 15:14:28
Original commit files touched by this commit  0.08_1
Revision:314580
vanilla search for other commits by this committer
1: Upgrade protobuf to 2.5.0.
2: bump revision.
3: document UPDATING.
27 Sep 2012 09:59:25
Original commit files touched by this commit  0.08
Revision:304954
makc search for other commits by this committer
Add new ports biology/plink [1] and biology/plinkseq [2]:

PLINK is a free, open-source whole genome association analysis toolset.
PLINK/SEQ is an open-source C/C++ library for working with human
genetic variation data.

PR:		ports/171918 [1]
PR:		ports/171922 [2]
Submitted by:	Jason Bacon <jwbacon at tds.net>

Number of commits found: 8

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